Reverse Dependencies of tifffile

The following projects have a declared dependency on tifffile:

• 3D-registration — Some scripts to register images in space and time
• abraia — Abraia Python SDK
• ac-segmentation — Segmentation for Axonal Connectomics
• acia — The acia library provides utility functionality for analyzing 2D+t time-lapse image sequences in microfluidic live-cell imaging experiments.
• acquire-imaging — no summary
• acquire-zarr — Performant streaming to Zarr storage, on filesystem or cloud
• acryo — An extensible cryo-EM/ET toolkit for Python.
• aether — Welcome to the Aether Platform
• AFMReader — Read and retrieve data from various AFM file formats.
• aics-bead-alignment-core — Core algorithms for aligning CZI images
• aics-pipeline-uploaders — This package contains resources for uploading pipeline data to FMS
• aicsimageio — Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Pure Python
• aind-large-scale-prediction — Generated from aind-library-template
• aind-metadata-mapper — Package to manage mapping of source data into aind-data-schema metadata files.
• aind-segmentation-evaluation — Python package for evaluating neuron segmentations in terms of the number of splits and merges
• airclick — airclick 相关python包
• allencell-segmenter-ml — A plugin to leverage ML segmentation in napari
• alpineer — Toolbox for Multiplexed Imaging. Contains scripts and little tools which are used throughout ark-analysis, mibi-bin-tools, and toffy.
• anchor-droplet-chip — Segment organoids and measure intensities
• anomalib — anomalib - Anomaly Detection Library
• anu-ctlab-qemscan-bse-to-zarr3 — Convert QEMSCAN data to a Zarr V3 image pyramid with OME-Zarr metadata
• apeer-ometiff-library — Library to read and write ometiff images
• apx-fractal-task-collection — A collection of custom fractal tasks.
• arctic-ai — Python package for Arctic Workflow. Mirrors jupyter developments.
• area-detector-handlers — DataBroker 'handlers' for Area Detector
• argueview — ArgueView is a tool for generating text-based presentations for machine-learning predictions and feature-importance based explanation tools. The tool makes use of Toulmin's model of argumentation for structuring the text-based explanations.
• ark-analysis — Toolbox for analysis on segmented images from MIBI.
• arraylake — Python client for ArrayLake
• ascript — airclick 相关python包
• ashlarUC2 — Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
• astroCAST — Package to analyze calcium fluorescence events in astrocytes
• audiossl — no summary
• autoballs — Python package for segmentation of axons and morphological analysis.
• auxiliary — TODO.
• b3get — library to download image sets from Broad Bioimage Benchmark Collection images
• BactFit — Coordinate transformations for bacterial cell masks
• batoolset — An aggregate of functions I find useful
• bbbc-datasets — PyTorch-compatible dataset manager for BBBC datasets
• bblib — beambusters library to refine the detector center for crystallography data processing.
• bbo-pysisplit — Split ScanImage TIFFs into multiple files
• beambusters — no summary
• beatprofiler — Cardiac functional analysis tool for in vitro models
• bfio — Simple reading and writing classes for tiled tiffs using Bio-Formats.
• bg-atlasapi — A lightweight python module to interact with atlases for systems neuroscience
• bigstream — Tools for distributed alignment of massive images
• bio-image-unet — Implementations of U-Net, Siam U-Net and 3D U-Net for biological image segmentation
• bioimage — bioimage - library to make working with biomedical images more comfortable
• bioimageio.spec — Parser and validator library for bioimage.io specifications
• bioimageloader — load bioimages for machine learning
• bioio — Image reading, metadata management, and image writing for Microscopy images in Python
• bioio-ome-tiff — A BioIO reader plugin for reading tiff files in the OME format.
• bioio-ome-tiled-tiff — A BioIO reader plugin for reading tiled ome.tiff images.
• bioio-tiff-glob — A BioIo reader for reading Tiff Glob images
• bioio-tifffile — A BioIO reader plugin for reading TIFFs using Tifffile
• biom3d — Biom3d. Framework for easy-to-use biomedical image segmentation.
• bisque_api — Bisque Module API
• biteen-utilities — Tools for working with single-molecule localization data.
• bitfount — Machine Learning and Federated Learning Library.
• blender-tissue-cartography — Pipeline for tissue extraction and analysis of surfaces from volumetric mircroscopy data using blender
• bliqtools — A simple module for testing used at Bliq Photonics
• bloby — Package that performs blob detection on 3D TIF Stacks
• bluesky — Experiment specification & orchestration.
• brainatlas-api — A lightweight python module to interact with atlases for systems neuroscience
• brainglobe-atlasapi — A lightweight python module to interact with and generate atlases for systems neuroscience.
• brainglobe-napari-io — Read and write files from the BrainGlobe computational neuroanatomy suite into napari
• brainglobe-segmentation — Segmentation of anatomical structures in a common coordinate space
• brainglobe-stitch — A tool to stich large tiled datasets generated by the mesoSPIM.
• brainglobe-utils — Shared general purpose tools for the BrainGlobe project
• brainglobe-workflows — A collection of end-to-end data analysis workflows executed using BrainGlobe tools.
• brainio — Loading and saving of brain imaging data.
• brainlit — Code to process and analyze brainlit data
• brighteyes-ffs — Toolbox for analysing FCS/FFS data with array detectors
• burst2safe — A package for converting ASF-derived Sentinel-1 burst SLC products to the ESA SAFE format
• byotrack — Biological particle tracking with Python
• BZMicroStitcher — A package to stitch microscope images.
• cad2vox — A python library to provide the user interface for the CudaVox library
• cajal — A library for multi-modal cell morphology analyses using Gromov-Wasserstein (GW) distance.
• camacq — Control microscope through client server program.
• cardiac-mps — Tools for working with caridac mps files
• careamics — Toolbox for running N2V and friends.
• careamics-stubs — Toolbox for running N2V and friends.
• CartiMorph-nnUnet — nnU-Net with minor revisions tailored for the CartiMorph framework.
• ccp4ED — Electron diffraction utilities
• cd_sem — SEM image analysis
• cdb-cellmaps — no summary
• cell-AAP — no summary
• cell-bin — A framework for generating single-cell gene expression data
• cell-imaging — no summary
• cell-imaging-utils — no summary
• cell-tracking-bc — Base Classes for Cell Tracking in Microscopy
• Cellamander — A package for combining Cellpose gradients for cell phenotyping
• Cellan — Analyze cell images.
• cellcutter — cellcutter is a Python module for creating thumbnail images of cells given a multi-channel TIFF image and segmentation mask
• celldega — no summary
• cellfinder — Automated 3D cell detection in large microscopy images
• cellfinder-core — Automated 3D cell detection in large microscopy images
• cellfinder-napari — Efficient cell detection in large images
• cellocity — Velocity and vector analysis of microscopy data
• cellori — Cellori
• CellPatchExtraction — no summary