Reverse Dependencies of tifffile

The following projects have a declared dependency on tifffile:

• imio — Loading and saving of image data.
• impose — Fit and superimpose shapes from different imaging modalities
• imppy3d — IMPPY3D: A library for processing 3D image stacks
• impy-array — Speed up coding/extending image analysis in Python.
• imspire — ImSpiRE is a python script (python 3.8+) for spatial resolution enhancenment by solving the entropic regularized fused Gromov-Wasserstein transport (FGW) problem for in situ capturing (ISC) spatial transcriptome.
• insardev-toolkit — InSAR.dev (Python InSAR): Geospatial Processing Toolkit
• insituTEM — A package of tools for processing in situ TEM data
• instamatic — Python program for automated electron diffraction data collection
• instanseg-torch — Package for instanseg-torch PyPi
• integer-wavelets — no summary
• iohub — N-dimensional bioimaging data I/O with OME metadata in Python
• IPAM-PACMan — PACMan: An chlorophyll-a fluorometry automation software designed for Walz (GMBH) Microscopy IPAM.
• IQA-Metrics-Toolbox — Image quality assessment metrics toolbox
• irisSeg — Daugman implementation to segement iris and pupil
• jnormcorre — Jax-accelerated implementation of normcorre
• kf-d3m-primitives — All Kung Fu D3M primitives as a single library
• kimimaro — Skeletonize densely labeled image volumes.
• koopa — Workflow for analysis of cellular microscopy data.
• koopa-viz — Vizualization plugin for koopa image analysis
• korpuskulum — Package to evaluate particle distribution with respect to segmented membranes
• KUtilz — Quality of life utils that apply to vanilla python
• kwgis — The kwgis module
• kymotools — Scripts for kymograph processing
• labcams — Multicamera video acquisition,online compression and automation
• labeling — A package to create labeling/segmentation information based on pixel values.
• labnas — no summary
• large-image-source-tifffile — A tifffile tilesource for large_image.
• lazyimread — A lazy image reading library for various file formats
• lbm-caiman-python — Light Beads Microscopy 2P Calcium Imaging Pipeline.
• LensMotionMania — Dip package for images and videos
• lfdfiles — Laboratory for Fluorescence Dynamics (LFD) file formats
• liffile — Read Leica image files (LIF, LOF, XLIF, XLCF, XLEF, and LIFEXT)
• linc-convert — Linc Convert Scripts
• litdata — The Deep Learning framework to train, deploy, and ship AI products Lightning fast.
• lite-fastapi-local — A small example package
• livermask — A package for automatic segmentation of liver from CT data
• lls-core — Core functionality for analysing and visualizing lattice lightsheet and Oblique Plane Microscopy data.
• llspy — Lattice Light Sheet Processing Tools.
• Lmgeo — Python raster GIS library with low memory requirements.
• localmd — Method for compressing neuroimaging data using spatially localized low-rank matrix decompositions
• locan — Analysis software for single-molecule localization microscopy
• locpix — Package for analysing SMLM data
• lohrasb — This versatile tool streamlines hyperparameter optimization in machine learning workflows.It supports a wide range of search methods, from GridSearchCV and RandomizedSearchCVto advanced techniques like OptunaSearchCV, Ray Tune, and Scikit-Learn Tune.Designed to enhance model performance and efficiency, it's suitable for tasks of any scale.
• lsfmpy — HDF5-based software for storing and managing voluminous 3D imaging data
• lumicks.pylake — Bluelake data analysis tools
• macsima2mc — stages MACSima tiles for registration with ASHLAR in MCMICRO.
• magellanmapper — 3D atlas analysis and annotation
• magnify — A microscopy image processing toolkit.
• makemedicom — no summary
• malpolon — Malpolon v2.1.2
• maps4fs — Generate map templates for Farming Simulator from real places.
• mbo-utilities — Various utilities for the Miller Brain Observatory
• mcd-stitcher — MCD to Zarr conversion and stitching
• MDCatch — Fetch metadata from EPU / SerialEM and launch on-the-fly pre-processing
• mdml — Application of Deep learning on molecular dymanamics trajectories
• meddlr — Meddlr is a config-driven framework built to simplify ML-based medical image reconstruction and analysis.
• megafish — Multi-omics Extensible GPU-Accelerated FISH analysis framework
• mesmerize — Calcium imaging analysis platform
• mesospim-control — mesoSPIM microscope control
• metamorph-mda-parser — Light-weight parsing of Metamorph/VisiView .nd files.
• MFWS — Multiple Fast Fourier Transform weighted stitching algorithm.
• micdata — Load and process microscopy data for deep learning
• microaligner — MicroAligner: image registration for large scale microscopy
• microEye — A python toolkit for fluorescence microscopy that features hardware control, data analysis and vizualization for super-resolution single-molecule localization microscopy and single-partical tracking.
• microfilm — Creating figures and animations for multi-channel images with a focus on microscopy.
• microscope-automation — Automation software for the AICS Microscopes.
• microscoper — A simple wrapper for python-bioformats to convert .vsi CellSense format to TIFF.
• MicroSSIM — Improved structural similarity metrics for comparing microscopy data.
• minerva-lib — Minerva Python library
• Mistic — Mistic: A package for rendering multiple multiplexed images simultaneously
• mitosisanalyzer — Tool to track spindle pole movements in fluorescently labeled mitotic cells.
• mmcv-lite — OpenMMLab Computer Vision Foundation
• MMV-RegionSeg — Napari plugin for the segmentation of regions by flood
• mnfinder — A package for segmenting micronuclei in microscopy images
• MobilTelesco — no summary
• monai — AI Toolkit for Healthcare Imaging
• monai-weekly — AI Toolkit for Healthcare Imaging
• morphodynamics — Cell segmentation and windowing
• motile-plugin — Tracking with motile
• motile-tracker — Application for interactive tracking with global optimization
• mousechd — Segmenting hearts and screening congenital heart diseases in mice
• mouselungseg — YoloV8 model for the segmentation of the lungs in mice CT scans.
• movemeter — A motion analysis tool
• moviemaker — An ultra simple image to movie converter.
• mozi-ai — 墨子AI:军事人工智能领航者, developed by HSFW
• mpl-data-cast — convert and transfer data to network shares
• ms-image-tool — Tools for handling multispectral images and generating vegetation indices.
• multi-interface-inversion — calculate gravity anomalies from multi-interfaces and estimate double-interfaces model from gravity anomalies, given prior information about constraints between the density interfacesthe using Crust1.0 model, where Vertical Gravity Gradient data are used asinputs
• multiplex-imaging-pipeline — A Python library for multiplex imaging analysis
• multiplex2brightfield — A package to convert a multiplex image to a virtual blightfield image such as H&E or IHC. Both the input and output are in OME-TIFF file format.
• multireg — Registration of 3D multiplex images with one common chanel
• multisesh — For combining and analysing microscope imaging data made in multiple different sessions.
• multiview-stitcher — Registration and fusion of large imaging datasets in 2D and 3D.
• mycelyso — MYCElium anaLYsis SOftware
• Mzarr — Mzarr (Multi-Resolution Zarr) is a Python library for working with the Mzarr image format
• n2v — Noise2Void allows the training of a denoising CNN from individual noisy images. This implementationextends CSBDeep.
• nabu — Nabu - Tomography software
• nagini3D — Implementation of NAGINI-3D, a python package designed for Multi-Object Segmentation in Biological Imaging based on deep learning and active surfaces.
• nanite — Loading, fitting, and rating AFM force-distance data
• NanoImagingPack — An image processing package meant for use in the optics and microscopy community