Reverse Dependencies of tifffile

The following projects have a declared dependency on tifffile:

• eerfile — Read electron event representation (EER) files in Python
• efficientv2-unet — A U-Net implementation of the EfficientNetV2.
• element-zstack — DataJoint Element for Volume Segmentation
• ellipsis — Package to interact with the Ellipsis API
• ellipsis-AI — Package to use Ellipsis Drive for AI
• ellipsisAI — Package to use Ellipsis Drive for AI
• EmbedSeg — EmbedSeg provides automatic detection and segmentation of objects in microscopy images
• embryoseg — SmartSeed Segmentation for animal embryonic cells.
• emobject — data abstraction and libraries for spatial omics
• enact-SO — ENACT is a self-contained pipeline designed to streamline Visium HD analysis from cell segmentation to annotation, enabling integration with advanced spatial analysis tools.
• eoreader — Remote-sensing opensource python library reading optical and SAR constellations, loading and stacking bands, clouds, DEM and spectral indices in a sensor-agnostic way.
• epyseg — A deep learning based tool to segment epithelial tissues. The epyseg GUI can be uesd to build, train or run custom networks
• eQuimage — eQuimage is a tool to postprocess astronomical images from Unistellar telescopes.
• eQuimageLab — eQuimageLab is a tool to postprocess astronomical images with JupyterLab notebooks
• essimaging — Imaging data reduction for the European Spallation Source
• EtaML — An automated machine learning platform with a focus on explainability
• eubi-bridge — A package for converting datasets to OME-Zarr format.
• ever-beta — A Library for Earth Vision Researcher
• evosegment — A tool for segmentation of grayscale evolution from 4D tomograhphy data (or other images)
• EyesOpen — A simple digital forensics tool.
• fake-check — baseline deepcheck module
• FalseColor — Methods for H&E pseudo coloring of grayscale fluorescent images
• faser — Faser is a tool for vectorial psf simulation
• fastddm — A Python/C++ library for the analysis of Differential Dynamic Microscopy experiments
• fibretracker — A python library to track fibre in a volume
• fibsem-tools — Tools for processing FIBSEM datasets
• finn-viewer — n-dimensional array viewer for cell tracking data in Python
• FiReTiTiPyLib — Python libraries used as support/tools.
• fishsound-finder — Python software to automatically detect fish sounds in passive acoustic recordings
• fissa — A Python Library estimating somatic signals in 2-photon data
• FLIM-fit — This GUI performs fluorescence lifetime decay analysis at cellular level.
• FluoSA — Fluorescence Signal Analyzer for calcium imaging on user-defined neural structures.
• fluospotter — Python library designed for nuclei segmentation and puncta detection in fluorescence microscopy images.
• foco-improc — standalone repository for image processing algorithm implementations
• fourier-image-transformer — Fourier Image Transformer
• frat-brain — Application for ROI fMRI data analysis.
• funcnodes-microscopy — A package to perform advanced microscopy data analysis
• galaxy-data — Galaxy datatype framework and datatypes
• galaxy-tool-util — Galaxy tool and tool dependency utilities
• GANrec — A deep neural network data reconstruction platform
• gatorpy — GATOR: A scalable framework for automated processing of highly multiplexed tissue images
• gendeblur — Library for blind image deconvolution using genetic algorithm
• generate-tiff-offsets — A package to generate TIFF offsets
• geotiff — A noGDAL tool for reading and writing geotiff files
• geotils — geotils by GEOAI group
• geowatch — no summary
• GhostScan — three-dimensional imaging and projection
• glue-genes — Multidimensional data visualization for genomics
• gonio-analysis — Spatial motion analysis program
• gonio-imsoft — Goniometric imaging software
• gpix — no summary
• graphcompass — Spatial metrics for differential analyses of cell organization across conditions
• graphite-datasets — tensorflow/datasets is a library of datasets ready to use with TensorFlow.
• gucker — a simple watcher for file events, streaming to arkitekt
• h5grove — Core utilities to serve HDF5 file contents
• h5tiff — a flexible converter to extract tiff files from h5
• harmony-to-organoid — Utility for extracting individual organoid max projections from the export of Opera Phenix Harmony software.
• harp-image-preprocess — Cross-platform application for automating the processing of μCT and OPT image data.
• hdaf-filter — Fourier filtering using the Hermite Distributed Approximation Functions as the low-pass filter
• heifetslab-unravel — UNRAVEL: UN-biased high-Resolution Analysis and Validation of Ensembles using Light sheet images
• herbs — A Python-based GUI for Histological E-data Registration in Brain Space
• hesperos — A plugin to manually or semi-automatically segment medical data and correct previous segmentation data.
• hextof-processor — Hextof Offline Analyzer
• hextools — Tools for NSLS-II HEX beamline
• hi-ml-cpath — Microsoft Health Futures package for deep learning on histopathology images
• himena-image — Himena plugin for image processing and analysis
• histo-patch — histopatch: image patch extraction from Whole Slide Images
• histo-tools — General histology tools.
• histogram-manipulation — A library for histogram manipulation of images
• histutils — Utilities for reading HiST data, etc.
• HiTIPS — HiTIPS: High-Throughput Image Processing Software for FISH data analysis
• HiVis — A user friendly tool for working with VisiumHD data
• hnzhu010503 — A small example package
• hnzhu010504 — A small example package
• hnzhu010506 — A small example package
• hnzhu010507 — A small example package
• hotaru — High performance Optimizer to extract spike Timing And cell location from calcium imaging data via lineaR impUlse
• hsi-moss — Hyperspectral image processing pipeline for moss sample images
• hubmap-ome-utils — OME-XML utility functions for HuBMAP computational pipelines
• HyperEvalSR — An open source python package for super-resolution/recovery quality evaluation of hyperspectral images, including RMSE, ERGAS, SSIM, RSNR, PSNR, CC, DD, and SAM.
• HyperStackView — Graphical application for rendering three-dimensional raster images
• iipv — Integrate image sequence visualization into your Python project
• image-analysis — Python-based software for XRD data analysis.
• image-functions — Image Processing Functions
• image-processing-package-gleyson-atanazio — Módulo para processamento e comparação de imagens.
• image-processing-rbiegelmeyer — My second package
• image-processor-alexsva — Python package to perform various image processing tasks
• image-tiles — Serve a webpage with images from a folder.
• imagecodecs — Image transformation, compression, and decompression codecs
• imageio — Library for reading and writing a wide range of image, video, scientific, and volumetric data formats.
• ImageTileProcessor — This is a in-house package to deal with lazy tiled image tile loading to save RAM and various methods to post process tiled outpus s
• ImageUpscaler — A package for upscaling images using neural networks.
• imaging-server-kit — Deploy image processing algorithms in FastAPI servers.
• imaris-convert — A tool for converting images to Imaris format
• imaris-cooker — A tool for converting IMS format images to TIFF format
• IMC — A package for processing and analysis of imaging mass cytometry (IMC) data.
• imc-analysis — A multi-file Python command line tool with commands qc, phenotype, and visualize.
• imcpipeline — A pipeline and utils for IMC data analysis.
• Img-prcs-package — I'm a software development student
• img-processing-dio — Projeto DIO