Reverse Dependencies of tifffile

The following projects have a declared dependency on tifffile:

• NanoImgPro — Nanosensor Image Processor (NanoImgPro), a python-based image analysis tool for dopamine nanosensors
• nanosimpy — The nano simulation python libary
• napari — n-dimensional array viewer in Python
• napari-3dtimereg — Registration of 3D movies applied to all channels
• napari-allencell-annotator — A plugin that enables annotations provided by Allen Institute for Cell Science
• napari-annotatorj — The napari adaptation of the ImageJ/Fiji plugin AnnotatorJ for easy image annotation.
• napari-bacseg — Bacterial segmentation and analysis platform than can inport/export files in multiple formats. Integrating many tools such as Cellpose, ColiCoords, Oufti/MicrobeTracker.
• napari-blender — A plug-in to help visualize and analyze organoid segmentation using Blender
• napari-boxmanager — Particle selection tool for cryo-em
• napari-brainreg-standard — Visualise brainreg registration output in standard space
• napari-bud-cell-segmenter — A plugin to segment embryonic mammary bud cells and detect 2 RNA probes
• napari-cell-centroid-annotator — A simple plugin to annotate cell centroids in 3D images
• napari-cellseg3d — Plugin for cell segmentation in 3D
• napari-clemreg — A plugin for registering multimodal image volumes based on common segmented structures of interest with point-clouds.
• napari-convpaint — A plugin for segmentation by pixel classification using pre-trained neural networks for feature extraction
• napari-cryofibsem-monitor — A plugin to monitor the creation of lamella using AutoTEM on a TFS Acquilos instrument
• napari-ctc-io — Drag and drop/write tracks from/to the Cell Tracking Challenge (CTC) format.
• napari-czifile2 — Carl Zeiss Image (.czi) file support for napari
• napari-dab-cellcount — A napari plugin for counting cells.
• napari-data-preview — Preview lightsheet microscopes acquisition, and allow the creation of an XML for importing the data into TeraStitcher.
• napari-dinosim — A simple plugin to use DinoSim in napari
• napari-dmc-brainmap — Image analysis pipeline for quantification of 2D mouse brain anatomical tracing data
• napari-epyseg — Napari plugin to segment epithelia with EpySeg
• napari-file2folder — Save multidimensional file as folder of tifs
• napari-findaureus — Locate bacteria in CLSM obtained infected bone tissue images
• napari-generic-SIMulator — A napari plugin to simulate raw-image stacks of Structured illumination microscopy (SIM).
• napari-grid-cropping — Create multiple crops of an image in a grid like fashion.
• napari-imsmicrolink — Plugin to perform IMS to microscopy registration using laser ablation marks.
• napari-indices — Calculer les indices de végétation
• napari-large-image-importer — Napari plugin for easy, memory-efficient import of large images.
• napari-live-recording — A napari plugin for live video recording with a generic camera device.
• napari-micromanager — Micro-Manager GUI interface in napari.
• napari-mm3 — a plugin for mother machine image analysis
• napari-ndev — A collection of widgets to process images from start to finish--focused on neural development.
• napari-ndtiffs — napari plugin for nd tiff folders with OpenCl deskew
• napari-omaas — napari-OMAAS stands for Optical Mapping Acquisition and Analysis Software
• napari-open-ctc — "Drag and drop annotations/results in the Cell Tracking Challenge (CTC) format into napari."
• napari-phasors — A simple plugin to use phasor analysis
• napari-sentinel-zip — Stacks and opens Sentinel mission zip archives for one tile across different timepoints.
• napari-simple-orthoviewer — A simple orthogonal viewer in napari
• napari-stitcher — Stitch napari image layers in 2-3D+t
• napari-stpt — napari viewer which can read stpt, axio and imc images as zarr files
• napari-tapenade-processing — A visual pipeline to process images with Tapenade in Napari
• napari-tiff — official napari tiff reader and writer.
• napari-tifffile — A napari plugin for reading files via tifffile
• napari-tifffile-reader — A napari reader plugin for tiff images.
• napari-timeseries-opener-plugin — Simple plugin that opens separate .tif files as a 3-dimensional layer.
• napari-utrack-loader — A simple plugin to load images, detections and tracks from the u-track software into napari
• navigate-micro — Open source, smart, light-sheet microscopy control software.
• nd2 — Yet another nd2 (Nikon NIS Elements) file reader
• nd2-extractor — A simple tool to extract ND2 files to Zarr, PNG, or TIFF
• ndbioimage — Bio image reading, metadata and some affine registration.
• ndexchange — Python 3 program to download data from NeuroData
• ndreg — Registration package that does affine and LDDMM registration
• NehorayRapid — Rapid base tools package
• NehorayRapid1 — Rapid base tools package
• netpbmfile — Read and write Netpbm files
• nettracer3d — Scripts for intializing and analyzing networks from segmentations of three dimensional images.
• neura-library — Utility tools for system neuroscience research, including Open Source Wrapper or Parser
• neuralnets — A library, based on PyTorch, that implements basic neural network algorithms and useful functions
• NeuroAnalysisTools — Data analysis tools for systems neuroscience
• neurocarto — A web-interface channelmap editor for Neuropixels probe familiy
• neurocat — Interface Design for Neurocat's Research Engineer Test
• neuroconv — Convert data from proprietary formats to NWB format.
• neuroimage_denoiser — no summary
• neuroseg — A PyTorch-based framework for deep learning in neuroscience
• neurovc — Framework for Computer Vision setups in Neuroscience
• ngff-zarr — A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.
• ngtools — Build and manipulate Neuroglancer scenes
• nima — Numerical IMage Analyses.
• nionswift-io — NionSwift IO handlers.
• nis2pyr — Utility for converting Nikon ND2 files to tiled pyramidal OME TIFF files.
• nnunet — nnU-Net. Framework for out-of-the box biomedical image segmentation.
• nnunet-customized — nnU-Net. Framework for out-of-the box biomedical image segmentation.
• nnunet-inference-on-cpu-and-gpu — nnU-Net. Framework for out-of-the box biomedical image segmentation. Can do inference on both gpu(if cuda available) and cpu(if cuda not available)
• nnunetv2 — nnU-Net is a framework for out-of-the box image segmentation.
• nnunetv2-bm-custom — nnU-Net is a framework for out-of-the box image segmentation.
• no-vtf — Valve Texture Format Converter
• nomad_h5grove — Core utilities to serve HDF5 file contents
• novas3d — no summary
• npex — NeuroPAL extractor
• NPSAM — NP-SAM is an easy-to-use segmentation and analysis tool for nanoparticles and more.
• nr29467-16-preprocessing — Preprocessing for segmentation
• nsls2-detector-handlers — Staging repo for handlers specific to NSLS-II
• numena — Image Processing and Analysis toolbox package
• numpy2ometiff — Convert NumPy arrays to OME-TIFF
• numpyimage — Load, save, & manipulate image files as numpy arrays
• nunet — NU-Net
• nViz — A tool for creating and visualizing n-dimensional microscopy images.
• nwbmatic — NWB creator from various data streams
• nwbwidgets — This is nwbwidgets, widgets for viewing the contents of a NWB-file in Jupyter Notebooks using ipywidgets.
• nx5d — NX5 Duct Tape
• Ocrversion1 — no summary
• Ocrversion2 — no summary
• oct-to-tiff — A command line tool for converting optical coherence tomography angiography (OCTA) data.
• odc-geo — Geometry Classes and Operations (opendatacube)
• oiffile — Read Olympus image files (OIF and OIB)
• oldaicsimageio — A generalized scientific image processing module from the Allen Institute for Cell Science.
• omdenalore — AI for Good library
• OmeSliCC — Ome(ro) Slide Image Conversion and Compression pipeline