Reverse Dependencies of tifffile

The following projects have a declared dependency on tifffile:

• cellpose — anatomical segmentation algorithm
• cellpose-omni — cellpose fork developed for omnipose
• cellpose-omni-acdc — cellpose fork developed for omnipose
• cellpose-plus — cell segmentation framework based on cellpose
• cellpose-vollseg — modification of cellpose algorithm
• cellreel — graphical user interface for refractive index and " + fluorescence tomography
• cellshape-helper — 3D shape analysis using deep learning
• cellsium — CellSium – Cell Simulator for microfluidic microcolonies
• cellstitch-cuda — CUDA-accelerated CellStitch 3D labeling using Instanseg segmentation.
• celltk — live-cell image analysis
• cellvoyager-types — Pydantic models for CellVoyager metadata
• cenfind — Score cells for centrioles in IF data
• cgohlke — Install all packages by cgohlke
• channelintensities — Package for analyzing microscopy data of channels. Outputs intensities averaged over the width of the channel.
• chicken-coop — An environment for reproducing dominance hierarchies in RL agents
• chunkflow — Large Scale 3d Convolution Net Inference
• ciclope — Computed Tomography to Finite Elements
• CIDAN — cidan-Calcium Imaging Data ANalysis
• cisipy — Compressed imaging transcriptomics in Python.
• Clement — GUI for Correlative Light and Electron Microscopy
• clickpoints — Scientific toolbox for manual and automatic image evaluation.
• CloudReg — Automatic terabyte-scale cross-modal brain volume registration
• cmapfile — Write Chimera Map (CMAP) files
• codex2mc — stages CODEX data sets for being registered with ASHLAR in MCMICRO.
• cohere-core — no summary
• colicoords — Create a coordinate system in rod-shaped cells.
• competitionassay — Software for the analysis of competition assay data.
• ComSeg — single cell RNA profiling analysis of imaging-based spatial transcriptomics data
• concert — Lightweight beamline control system
• confettii — no summary
• confluentfucci — no summary
• contact-sites — no summary
• cpx — no summary
• crip — CT Recon in Python is an All-in-one toolkit for CT Data IO, Pre/Post-process, Physics, Dual Energy, Low Dose and everything.
• crl-datacube — Utilities for scaling geospatial analyses
• croparray — Python module for for creating and manipulating an array of crops (or regions of interest) from images obtained using single-molecule microscopy.
• cryoemservices — Services for CryoEM processing
• cryohub — IO hub for Cryo-EM, Cryo-ET and subtomogram averaging data.
• csbdeep — CSBDeep - a toolbox for Content-aware Image Restoration (CARE)
• csi-images — CSI-Cancer image-related data structures and basic processing.
• cspot — CELL SPOTTER (CSPOT): A scalable framework for automated processing of highly multiplexed tissue images
• ct-segnet — Automated 3D segmentation powered by 2D convolutional neural networks
• CudaVox — Python bindings for a C++ library to convert mesh models into Voxel images with OpenMp and CUDA
• cuisto — Quantification of objects in histological slices
• custom-bgr — Customized background removal app
• cylindra — Spectral analysis, simulation and subtomogram averaging of heterogenic cylindrical structures
• cyto-dl — Collection of representation learning models, techniques, callbacks, utils, used to create latent variable models of cell shape, morphology and intracellular organization.
• cyto-studio — napari viewer which can read multiplex images as zarr files
• czifile — Read Carl Zeiss Image (CZI) files
• danila — This is the module for detecting and classifying text on rama pictures
• danila-lib — This is the module for detecting and classifying text on rama pictures
• dask-image — Distributed image processing
• data-management-demo — Data management solution demo
• dataArtist — no summary
• databroker — Unification of NSLS-II data sources
• dataset-image-converter — Image dataset format benchmark
• dcclab — A Python library to read, transform, manipulate images and manage databases
• dcm2hdr — DCM2HDR - DICOM to HDR (16bit TIFF/PNG) converter
• deepflash2 — A Deep learning pipeline for segmentation of fluorescent labels in microscopy images
• deepinterpolation — Implemenent DeepInterpolation to denoise data by removing independent noise
• deepprojection — Trainable projection of 3D microscopy stacks using deep learning
• deeptile — Large image tiling and stitching library for scaling Python functions to arbitrary input image sizes.
• deeptissueunet — no summary
• delta2 — Segments and tracks bacteria
• dendritic-arborization-tracer — A tool to segment dendrites
• depalma-napari-omero — Napari interface for the De Palma lab.
• descarteslabs — Descartes Labs Python Client
• designer2 — designerV2
• devolearn — Accelerate data driven research in developmental biology with deep learning models
• dexp — Light-sheet Dataset EXploration and Processing
• dextrusion — DeXtrusion: automatic detection of cell extrusion in epithelial tissu
• dic-capture — no summary
• dicom-wsi — Package for converting whole slide image files to dicom.
• diffractem — Some tools for working with serial electron microscopy data.
• DigiPathAI — Deep Learning toolbox for WSI (digital histopatology) analysis
• digitalarztools — Digital Arz tools for applications
• digitalsreeni-image-annotator — A tool for annotating images using manual and automated tools, supporting multi-dimensional images and SAM2-assisted annotations
• directionality-quantification — Package for cell directionality quantification.
• dkist-processing-cryonirsp — Science processing code for the Cryo-NIRSP instrument on DKIST
• dkist-processing-dlnirsp — Science processing code for the DLNIRSP instrument on DKIST
• dkist-processing-vbi — Processing code for the VBI instrument on DKIST
• dkist-processing-visp — Science processing code for the ViSP instrument on DKIST
• dlg-home-content — model to identify tv sizes using images
• dlsia — Deep Learning for Scientif Image Analysis
• dlup — A package for digital pathology image analysis
• dnn-tts-torch — This is a library consisting of pre-trained models for the synthesis of Russian and English speech
• Dosepy — Film dosimetry and gamma analysis for dose distributions in radiotherapy
• dpcmaps — Software for generating and analysis of DPC Maps
• dpm-tools — A collection of tools and workflows to streamline the processing and visualization of porous media images.
• drca — DR assisted cluster analysis for hyperspectral datasets
• drcell — GUI to generate, cluster and optimize dimensionality reduction output
• drymass — manipulation and analysis of phase microscopy data
• DuSC_explorer — Graphical user interface to view Dual Space Crystallography data from the 4D Camera of the Molecular Foundry.
• easimage — Image and video management for research use, in an unified easy to use API
• easyidp — A handy tool for dealing with region of interest (ROI) on the image reconstruction (Metashape & Pix4D) outputs, mainly in agriculture applications
• eats-worm — Method for extracting GCaMP signal from volumetric imaging recordings
• eda-plugin — Event-driven acquisition
• EduRPA — education librabry for RPA
• edurpa-document — education librabry for RPA
• EDutilities — Continuous Electron Diffraction utilities