Reverse Dependencies of tifffile

The following projects have a declared dependency on tifffile:

• subsurface-terra — Subsurface data types and utilities. This version is the one used by Terranigma Solutions. Please feel free to take anything in this repository for the original one.
• suitcase-tiff — no summary
• suite2p — Pipeline for calcium imaging
• suite2p-haisslab — Pipeline for calcium imaging
• surfcut — Cutting confocal stacks at various depths relative to surface signal
• swcgeom — Neuron geometry library for swc format
• sxdm — Tools for analyzing Scanning X-ray Diffraction Microscopy data
• SyMBac — A package for generating synthetic images of bactera in phase contrast or fluorescence. Used for creating training data for machine learning segmentation and tracking algorithms.
• synth-data-metrics — Synthetic Data Metrics is a Python library for evaluating synthetic data quality across a wide range of data types (image, tabular, time series, language) and approaches to evaluation.
• synthetic-data-metrics — Synthetic Data Metrics is a Python library for evaluating synthetic data quality across a wide range of data types (image, tabular, time series, language) and approaches to evaluation.
• tabrec-v — tabrec-v
• tapenade — A repository to process organoid images
• tardis-em — PyTorch segmentation of 2D/3D images such as electron tomography (ET),Cryo-EM or fluorescent microscopy data into 3D segmented point cloud.
• tarikED — Electron diffraction utilities
• tati-tools — Tools for computer vision tasks.
• tau-fibrils-yolo — YoloV8 model for the detection of Tau fibrils in EM images.
• taufactor — TauFactor is an application for calculating tortuosity factors from tomographic data
• tensorflow-datasets — tensorflow/datasets is a library of datasets ready to use with TensorFlow.
• tfds-nightly — tensorflow/datasets is a library of datasets ready to use with TensorFlow.
• tfds-nightly-gradient — tensorflow/datasets is a library of datasets ready to use with TensorFlow.
• tiatoolbox — Computational pathology toolbox developed by TIA Centre.
• tiff-inspector — A package for examining the structure and contents of the metadata contained within tiff files
• tiff-utils — A class for easy manipulation of tiff files
• tiffile — The tiffile package is deprecated. Please use the tifffile package instead.
• tiffit — Lightweight tiff utilities
• tiffslide — tifffile-based drop-in replacement for openslide-python
• tifftag — read tags from a tiff image generated by a ZEISS electron microscope
• tiffwrite — Write BioFormats/ImageJ compatible tiffs with zstd compression in parallel.
• tiftool — tiftool
• tiled — Structured Scientific Data Access Service
• tiledb-bioimg — Package supports all bio-imaging functionality provided by TileDB
• TilesetParser — no summary
• tily — Tumor-infiltrating lymphocytes prediction based on Whole Slide Imaging.
• tirf-ob — Croping tool for TIRF images
• TMO4CT — Distance-weighted local histogram equalization based tone mapping for CT images.
• tokenpdf — Generate printable PDF files for tabletop RPG tokens and maps
• tomoscan — "utilitary to access tomography data at esrf"
• tomwer — "tomography workflow tools"
• torch-rs — PyTorch Library for Remote Sensing
• torchsat — TorchSat is an open-source PyTorch framework for satellite imagery analysis.
• towbintools — All the tools used by the Towbin Lab !
• traccuracy — Utilities for computing common accuracy metrics on cell tracking challenge solutions with ground truth
• tracking-challenge-demo — A demo plugin to load, segment and save tracking challenge data.
• TrackPal — TrackPal: Tracking Python AnaLyzer
• tracktour — Network flow based tracker with guided error correction
• TrenchRipper — no summary
• truthdiscovery — Python3 library implementing a selection of truth discoveryalgorithms
• tumourkit — A SDK for tumour study
• turing-segment — BioTuring cell segmentation inference framework
• turintech-evoml-python-dependencies — Set of meta machine learning models by unifying the interface of different machine learning libraries based on the Scikit-learn API protocol
• tvipsconverter — GUI converter for movie data from TVIPS camerasinto other formats like .blo, .tiff and .hspy.Mainly for orientation mapping (PED) or 4D STEM experiments.
• TXM-Sandbox — Integrated Spectro-Imaging Analysis Toolbox
• txrm2tiff — A converter for Zeiss txrm and xrm files, created by & for B24 of Diamond Light Source
• ugpy — pythonic undergrad
• unet-lungs-segmentation — 3D U-Net model for the segmentation of the lungs in mice CT scans.
• unetseg — U-Net semantic segmentation for satellite imagery
• ur-material — no summary
• uspy — LEEM data analysis (and more...?)
• utoolbox-core — Core functions for uToolbox.
• v1dd-physiology — SDK for volumetric multi-photon data of V1 DeepDive project
• VessQC — Napari plugin for checking and correcting the segmentation
• VidFlow — making videos at lightspeed
• vidtrain — Deep learning annotation training and prediction workflow for microscopy video data
• viqi-api — ViQi Python API
• vitessce — Jupyter widget facilitating interactive visualization of spatial single-cell data with Vitessce
• vodex — VoDEx : Volumetric Data and Experiment Manager. Allows to load volumetric data based on experimental conditions.
• vollseg — Segmentation tool for biological cells of irregular size and shape in 3D and 2D.
• vqapi — ViQi Python API
• vs-tabletop — Virtual Scanner Tabletop Games
• vt-ugcs — VT Universal Ground Control Station Software
• WaterMap — Water Mapping from Remote Sensing Images
• webknossos — Python API for working with WEBKNOSSOS datasets, annotations, and for WEBKNOSSOS server interaction.
• weldx — Python API for the WelDX file format and standard
• wfield — Utilities to look at widefield data and align with the allen reference map.
• wkconnect — no summary
• workshop-demo — A demo napari plugin incorporating reader, writer and dock widget contributions using the new npe2 plugin architecture.
• wsic — Whole Slide Image (WSI) conversion for brightfield histology images
• wsinfer — Run patch-based classification on pathology whole slide images.
• wsinfer-mil — Run specimen-level inference on whole slide images.
• wsireg — python package for registering multimodal whole slide microscopy images
• xenon-lfp-analysis — Xenon LFP Analysis Platform
• xicam.NCEM — A Xi-CAM plugin for viewing NCEM data.
• xmidas — Multimodal Image Data Analysis Software
• xtiff — A tiny Python library for writing multi-channel TIFF stacks
• yapic-io — io data handling module for various image sources as interface for pixel classification tools
• yolov5-face — Real-time face detection using YOLOv5 - Fork
• zarrify — no summary
• zetastitcher — ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.
• zftracker — Python library for tracking group of zebrafish
• zjutcv — ZJUT toolbox for computer vision