Reverse Dependencies of zarr

The following projects have a declared dependency on zarr:

• abTEM — no summary
• ac-segmentation — Segmentation for Axonal Connectomics
• acoustics-hardware — Controlling hardware used in acoustic measurement systems
• acquire-imaging — no summary
• acquire-zarr — no summary
• affinder — Quickly find the affine matrix mapping one image to another using manual correspondence points annotation
• aggfly — Efficient spatial and temporal aggregation of gridded climate data
• aicsimageio — Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Pure Python
• aind-data-transfer — Services for compression and transfer of aind-data to the cloud
• aind-exaspim-pipeline-utils — AIND exaSPIM pipeline utilities.
• aind-large-scale-prediction — Generated from aind-library-template
• aind-ng-link — Python package for the generation of neuroglancer links
• aind-segmentation-evaluation — Python package for evaluating neuron segmentations in terms of the number of splits and merges
• aliby — Process and analyse live-cell imaging data
• allophant — A multilingual phoneme recognizer capable of generalizing zero-shot to unseen phoneme inventories.
• anemoi-datasets — A package to hold various functions to support training of ML models on ECMWF data.
• anemoi-training — A package to hold various functions to support training of ML models.
• anjl — A neighbour-joining library for Python.
• anndata — Annotated data.
• annotrack — napari plugin for annotating tracks to estimate error rates
• ark-analysis — Toolbox for analysis on segmented images from MIBI.
• arraylake — Python client for ArrayLake
• arviz — Exploratory analysis of Bayesian models
• arviz-base — Base ArviZ features and converters.
• asdf-zarr — Asdf extension to support Zarr arrays
• ashlarUC2 — Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
• astrohack — Holography Antenna Commissioning Kit
• astroviper — Astro Visibility and Image Parallel Execution Reduction
• autodidaqt — AutodiDAQt is a simple data acquisition framework. For science.
• autodidaqt-receiver — Analyis-side bridge for autodiDAQt.
• ax-env — dependency manager for XENONnT package
• axio2zarr — AXIOSCAN to Zarr conversion
• aydin — Aydin - Denoising but chill
• backedarray — Sparse and dense arrays backed by on-disk storage in Zarr or HDF5
• bbconf — Configuration package for bedbase project
• bellavista — Python package for interactive visualization of imaging-based spatial transcriptomics.
• bfio — Simple reading and writing classes for tiled tiffs using Bio-Formats.
• bia-explorer — no summary
• biapy — BiaPy: Bioimage analysis pipelines in Python
• bibat — Batteries-included Bayesian analysis template
• bigstream — Tools for distributed alignment of massive images
• bio2zarr — Convert bioinformatics data to Zarr
• biobookshelf — a collection of python scripts and functions for exploratory analysis of bioinformatic data in Python
• bioimageit-formats — Manage data formats for BioImageIT project
• bioio — Image reading, metadata management, and image writing for Microscopy images in Python
• bioio-ome-tiff — A BioIO reader plugin for reading tiff files in the OME format.
• bioio-ome-zarr — A BioIO reader plugin for reading Zarr files in the OME format.
• bioio-tiff-glob — A BioIo reader for reading Tiff Glob images
• bioio-tifffile — A BioIO reader plugin for reading TIFFs using Tifffile
• biosimulators-simularium — A Python tool for converting Biosimulators spatial simulation outputs into a Simularium-compliant format.
• bism — Biomedical Image Segmentation Models (BISM)
• blendernc — Blender add-on to import datasets (netCDF, grib, and zarr)
• bolero — sequence
• bolero-process — Data preprocessing for bolero package
• brainglobe-stitch — A tool to stich large tiled datasets generated by the mesoSPIM.
• brainlit — Code to process and analyze brainlit data
• bsccm — Access the Berkeley Single Cell Computational Microscopy
• carbonplan-forest-risks — forest carbon potential and risks
• carbonplan-forests — forest carbon potential and risks
• carbonplan-trace — tracking forest carbon emissions
• careamics — Toolbox for running N2V and friends.
• careamics-stubs — Toolbox for running N2V and friends.
• catmaid-catnap — Experiments working with CATMAID and napari
• ccfwidget — A Jupyter widget for the Allen Common Coordinate Framework (CCF) Mouse Brain Atlas.
• ccic — Chalmers Cloud Ice Climatology
• cellcanvas — A tool for painting in cellular architecture
• cellcutter — cellcutter is a Python module for creating thumbnail images of cells given a multi-channel TIFF image and segmentation mask
• celldega — no summary
• cellprofiler-core-nightly — cellprofiler-core implements the bulk of CellProfiler's non-gui functionality
• cellrank — CellRank: dynamics from multi-view single-cell data
• chelsa-cmip6 — This package contains function to create monthly high-resolution climatologies for a selected geographic area for min-, max-, and mean temperature, precipitation rate and bioclimatic variables from anomalies and using CHELSA V2.1 as baseline high resolution climatology. Only works for GCMs for which tas, tasmax, tasmin, and pr are available.
• CIDAN — cidan-Calcium Imaging Data ANalysis
• CircuitSeeker — Tools for finding neural circuits
• cirrocumulus — Bring your single-cell data to life
• climetlab — Handling of climate/meteorological dataa.
• clouddrift — Accelerating the use of Lagrangian data for atmospheric, oceanic, and climate sciences
• cmip6-downscaling — Climate downscaling using cmip6 data
• coastal-resilience-utilities — Utilities for conducting coastal resilience assessments
• cochlea-synapseg — A plugin to segment cochlear ribbon synapses automatically, as well as edit and adjust
• coclico — Python tools for Coastal Climate Core Services
• coiled-runtime — Simple and fast way to get started with Dask
• copernicus-marine-client — no summary
• copernicusmarine — no summary
• copick — Definitions for a collaborative cryoET annotation tool.
• CrackNuts — A library for cracknuts device.
• crl-datacube — Utilities for scaling geospatial analyses
• cronomaxrf — Python package to read and convert the Crono MA-XRF HDF5 data file format
• cryocanvas — A plugin for interactive segmentation of CryoET data using ML embeddings
• cryoet-alignment — Alignment format conversion for cryoET.
• cryohub — IO hub for Cryo-EM, Cryo-ET and subtomogram averaging data.
• csi-utils — utils for Wifi CSI data process
• cspot — CELL SPOTTER (CSPOT): A scalable framework for automated processing of highly multiplexed tissue images
• cubed — Bounded-memory serverless distributed N-dimensional array processing
• cvpl-tools — A Python package for utilities and classes related to the file I/O, dataset record keeping and visualization for image processing and computer vision.
• cwas — Category-wide association study (CWAS). This is a data analytic tool to perform stringent association tests to find non-coding loci associated with autism spectrum disorder (ASD).
• cylinter — CyLinter
• dacapo-ml — Framework for deployment of volumetric machine learning models, and easy composition of training jobs.
• dafits — Read FITS files in Dask Arrays.
• DaMa-ML — A framework for data management and is used to do data science and machine learning's pipelines
• dandi — Command line client for interaction with DANDI archive elements