ymp

View on PyPIReverse Dependencies (0)

0.3.1 ymp-0.3.1-py36-none-any.whl

Wheel Details

Project: ymp
Version: 0.3.1
Filename: ymp-0.3.1-py36-none-any.whl
Download: [link]
Size: 1631367
MD5: 20a91c12e22d2d9f52671e6ca6e8a2d1
SHA256: 74a30da95ec47346462c526517caf3fe329054222d1cc8c72d61ff090d85e743
Uploaded: 2024-07-19 20:47:06 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: ymp
Version: 0.3.1
Summary: Flexible multi-omic pipeline system
Author: Elmar Pruesse
Author-Email: elmar[at]pruesse.net
Home-Page: https://github.com/epruesse/ymp
Project-Url: Documentation, https://ymp.readthedocs.io
Project-Url: Source, https://github.com/epruesse/ymp
License: GPL-3
Keywords: bioinformatics pipeline workflow automation rnaseq genomics metagenomics conda bioconda snakemake
Classifier: Development Status :: 4 - Beta
Classifier: Environment :: Console
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)
Classifier: Natural Language :: English
Classifier: Operating System :: MacOS
Classifier: Operating System :: POSIX :: Linux
Classifier: Programming Language :: Python :: 3.6
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Platform: linux
Platform: macos
Requires-Python: >=3.10
Requires-Dist: snakemake (<8,>=7.32)
Requires-Dist: click (>8)
Requires-Dist: click-completion
Requires-Dist: ruamel.yaml (>0.15)
Requires-Dist: drmaa
Requires-Dist: pandas (>=0.20)
Requires-Dist: openpyxl
Requires-Dist: coloredlogs
Requires-Dist: xdg
Requires-Dist: aiohttp
Requires-Dist: tqdm (>=4.21.0)
Requires-Dist: sphinx; extra == "docs"
Requires-Dist: cloud-sptheme; extra == "docs"
Requires-Dist: sphinxcontrib-fulltoc; extra == "docs"
Requires-Dist: sphinx-click; extra == "docs"
Requires-Dist: sphinx-autodoc-typehints; extra == "docs"
Requires-Dist: ftputil; extra == "docs"
Provides-Extra: docs
Description-Content-Type: text/x-rst
License-File: LICENSE
[Description omitted; length: 7424 characters]

WHEEL

Wheel-Version: 1.0
Generator: setuptools (71.0.3)
Root-Is-Purelib: true
Tag: py36-none-any

RECORD

Path Digest Size
ymp/__init__.py sha256=zyJf_iTeK414sYohnlY7ApUCEEqC5_YzQdknNxniZ5Q 1971
ymp/__main__.py sha256=vaDZSEjTEds-rlFLguAZ3rEBkNVTPhBwMMBJ_k7rd7g 428
ymp/_version.py sha256=HzPz9rq3s1AiZXregKlqKaJJ2wGMtvH_a3V9la9CnpM 411
ymp/blast.py sha256=lTCSGtIdndpR9RKbZj3aaGExqntYMdB1gqzGNQvkeAk 9007
ymp/blast2gff.py sha256=BDKk9eSv6SPBb4cxGPX7U8AisJ_V5K0YEGmF1bS_KF4 970
ymp/cache.py sha256=TlmLKZjBvgPREEN0b7jI5a6R_LFm3ej2kba_L2vU1fE 7578
ymp/cluster.py sha256=KECtPt42LkhrMKFc4pelmKkOVR6SukWv8PICz8vpSgM 6875
ymp/common.py sha256=dJShbi79wFKwzZtK8SFldnbByg8F0zpzdm_ep9CEaF0 3546
ymp/config.py sha256=zg9z-n-RP5NyxMbj2ZX5WcjwY2tdgO557jUBX-k2BPU 16891
ymp/coverage.rules sha256=iVXVs_MfpXQ9RlihZPwhPEwxaD_0poc-u_uVIgrza9A 1617
ymp/dna.py sha256=_EWSdP3qFAyaYslBQs8m8GmEWit-uSsiCWLCkWxbcMA 336
ymp/download.py sha256=qGSjS0YWlDxMRkDQdnwYHr8vKlCa5JnVIHBJyEijos8 12248
ymp/env.py sha256=IkXH_4n2ThxRtHN0RZR_6m5jCMbL6F-4fH7ghjp0raU 16753
ymp/exceptions.py sha256=7XjwdwQv5xyrRJuV_0zJwN96w33079Z8rICk7wvUKAc 3954
ymp/gff.py sha256=NuISM0DjpwVB2Lzkzo2BPdJPqgSwb4ddmymthW-H-Bs 1924
ymp/helpers.py sha256=6-Zn3velXublL3ylMjn4WGNlXOG7zcGQ-_0Mq6SyvRg 1615
ymp/map2otu.py sha256=nf8axm5Gk1r8AU-IQbeta6Ntb0JS-b2RyolZqzAmjdU 2995
ymp/nuc2aa.py sha256=9Gj4ePpF4RS0w7R5lGYRWfZE6Q7HFcFFwcxCRFhO3qc 1573
ymp/snakemake.py sha256=AqtvDeJeL3FR341wfFh4E3QQ1u05RD8eXjEAEcc3tCY 43442
ymp/snakemakelexer.py sha256=K0tjX-z9Wk0KBZR2ssJw5NoLM4-7rvRERPB1uhbni4A 1504
ymp/sphinxext.py sha256=JTpKpWUVcgow3XxE3qQrniQWGb899IAbnMiqyPgIJ14 17215
ymp/string.py sha256=w0WDpa1MGOKR09h4Ks9yxr_wIRXxj02lPxmPdQvNWp4 7731
ymp/util.py sha256=vk_CxrQrYfoV5JwdyleqlhUGcPiH5Rq7ca_-2a4HIsY 10283
ymp/yaml.py sha256=_PC23_mZwOL6ANau4XvBxhVjQOavYQbPuByu1CG6wc8 15899
ymp/R/CAGs.Rmd sha256=u36VsK_c9mBNIRRcy0BoLkdri8hbrZtgawSTizTdeII 3315
ymp/R/ballgown_collect.R sha256=DMw9XXMXMu_jtK0Hh2kMqTpLNjZ07O794VhtJNSCBa0 418
ymp/R/blast.Rmd sha256=YIXmOvuIPnF0ZijXwxalXAIylaaCQ5_kLJi6az-qfRM 1213
ymp/cli/__init__.py sha256=bJGZoi86ytDu98es7o03ABOooJ5cXllm0C30OY2e05M 1751
ymp/cli/env.py sha256=NRx23o5bDvcwS5HMR7tyJf_4rdaRYaxYpQWkY7skzNo 12815
ymp/cli/init.py sha256=9Ew0QZMIQe8DQMJjjHPB9boAeCknlr28AsHCI0kDKtY 3545
ymp/cli/make.py sha256=YNWLLzbU1d7EsFPfLVthbicZQg61zoVCwrhs8Z_8dOw 14386
ymp/cli/scan.py sha256=yy93c89HAHyegN72po7Fe4a-t2gYV5QjM5Tzjudx1ac 4712
ymp/cli/shared_options.py sha256=illkwXrFhiLFxjrWDkxrqxFtpURnCfZmuB0BaQ2-JXI 6763
ymp/cli/show.py sha256=qQJ_4HZe4Qq7j44ktde-SbTkTeBz2zJJcFB4_k4msZk 3975
ymp/cli/stage.py sha256=yWXs6_cW1LLIIbqZQhwkjpiyrdAtSG3ESay_Y9lpqqk 3172
ymp/conda_envs/latest/README.md sha256=qQx964mru7Pm4VqjLtP6SLDWJw26-ko7mKoUxzMiIMM 628
ymp/conda_envs/latest/linux/ballgown.txt sha256=VVXnh0Z_Dd8tk9TOUoio2ekZQejq9RRq8v7I3QIqPD0 19289
ymp/conda_envs/latest/linux/ballgown.yml sha256=RLZ6dsDHNBcgPFmk9dXXcswCq_wnDD9E5RK0DGbjj-8 5358
ymp/conda_envs/latest/linux/bbmap.txt sha256=iX66Tzg1bkasMgEDzzXe4KnS0uLgXQOYe-BAL1bfOGI 8271
ymp/conda_envs/latest/linux/bbmap.yml sha256=u-evgg1YACsedLvWpemTdveSkDfIzst7Shf_dzq7PvQ 2129
ymp/conda_envs/latest/linux/bedtools.txt sha256=v2-nBLMObCatUPx7WvfI-IkXSgAY6qI7XfZ3vBrifhc 2772
ymp/conda_envs/latest/linux/bedtools.yml sha256=QfbQRy8DKybAL_NHZ48mdEsLfMhtj7EdvdM6qDH7Jnk 719
ymp/conda_envs/latest/linux/biom_format.txt sha256=KGrrMWjAoZF8oqLnYGBa0Eoc1zYTebPlXx80KfZYEv8 4758
ymp/conda_envs/latest/linux/biom_format.yml sha256=GlOEmktP6dbUhkrn_wIq1Yk6AQO75FMdpx65tgspoJo 1242
ymp/conda_envs/latest/linux/blast.txt sha256=tCgaoapy7LbQQWCvvsEkt1JYFSd8zAkkocABpZ4Mufw 10321
ymp/conda_envs/latest/linux/blast.yml sha256=xNGI34r4Q3VVxbrE6wAwOIeemuCjgr5O2pSpQIHnQHM 2886
ymp/conda_envs/latest/linux/blat.txt sha256=4ssfVunNpW0YNZiqS0WNKmVZXGO3XFoGZimo_UDAhR4 925
ymp/conda_envs/latest/linux/blat.yml sha256=xSF_590pnE7fOLW1dpV54vjw-e7M6wJN_0yY734Clw8 254
ymp/conda_envs/latest/linux/bmtagger.txt sha256=IsU7CBB5SqM8qjQf75Z23gZPWPh0dGJFnAaA1mRVdeI 10877
ymp/conda_envs/latest/linux/bmtagger.yml sha256=bosNSUr0YPQ44Ka0dY3nMaBB9-GXKgdXIx6ZzVyzfLU 3025
ymp/conda_envs/latest/linux/bowtie2.txt sha256=eHhfv3XSEhxsWtG3QwqfEl9y6YWwxmZUUVB8rR9HCk0 4270
ymp/conda_envs/latest/linux/bowtie2.yml sha256=aJ7p794-kj5f6hpbgBS_UvPuK9T2PBqkvDaRANDJ_iU 1091
ymp/conda_envs/latest/linux/cdhit.txt sha256=Rhvz_iCcwVTzWKlDWu032NLKRj4X9X38qD8HV0zRKeQ 1163
ymp/conda_envs/latest/linux/cdhit.yml sha256=0_awKcZJW_6tNy1eVeMEHaKCfMSc7Gss4EHh07IsyNs 321
ymp/conda_envs/latest/linux/centrifuge.txt sha256=URi89u_7MlCK_RXDPYlxAKDJDoTIXPDR-tnwNTjtXRc 3263
ymp/conda_envs/latest/linux/centrifuge.yml sha256=3yXjPPX00HSRqoljn5ix95vUaNYbD1wVu8pf_3TzgMA 862
ymp/conda_envs/latest/linux/diamond.txt sha256=UrAYcqb_5rcKmsBSTpTn0V0IQJh9aHBUN5QLF2vAH3I 3219
ymp/conda_envs/latest/linux/diamond.yml sha256=d-2VQQQ94gafyNL79jp0vCMApkT3xHn0GwGHn3zvn4w 817
ymp/conda_envs/latest/linux/fa2fq.txt sha256=NSV_WLGI6OYCCaLzwvse7lCWhLGvvJqSTDs3hQFicV8 932
ymp/conda_envs/latest/linux/fa2fq.yml sha256=x88Y1exj4tQ_DRC-qK5xsj54IsxGQDhkrlF9q2Qv0Zs 259
ymp/conda_envs/latest/linux/fastq-multx.txt sha256=JiHABcWVkQwrzJQ7AZTYGnl97kqYCPZk5m6vxQnZz_M 1059
ymp/conda_envs/latest/linux/fastq-multx.yml sha256=joOltkEdk4OihoSWHxCuJhD07if5hwlzpTYPnl6nPgo 308
ymp/conda_envs/latest/linux/fastqc.txt sha256=sI2NvPLYojC4xLxT0l09GFjas2Wxi9uupmj_Z858kY4 6353
ymp/conda_envs/latest/linux/fastqc.yml sha256=ExCYO-TUS80FWZ0cby1W7Lk1H84P-UYImpHbUKNMyjI 1686
ymp/conda_envs/latest/linux/hisat2.txt sha256=tEu0IR3vH2AE7XoWTzMGX2bS6LDw6A_OUCpOxFm44hQ 4051
ymp/conda_envs/latest/linux/hisat2.yml sha256=bzNYWA6F4YbVxJVUd6BCUFMZkrHyu8UPtQIzJEnQoPk 1043
ymp/conda_envs/latest/linux/humann2.txt sha256=0KnOXwMbDuylz07JyNbu7ZLrT33aalQjibrhgOkxNkM 10777
ymp/conda_envs/latest/linux/humann2.yml sha256=8Hrq9T5jSsoJel92LHobjLeSOAJOn0fyUnovY3BYP1E 2760
ymp/conda_envs/latest/linux/megahit.txt sha256=v5kz1rgBsx2FZlr55dzU3tXo0Vp9SgzNS8qoEkRgMKk 3123
ymp/conda_envs/latest/linux/megahit.yml sha256=mStwcc68w5Xajshs6ayFy2_a13-S55VDQTxdwHj7RY8 808
ymp/conda_envs/latest/linux/metabat2.txt sha256=2D8RSSNTvfFqQ8_6BbqEt0-Gwkba0Q81XzwIopHckcA 2882
ymp/conda_envs/latest/linux/metabat2.yml sha256=f-6ZCY1kCtB_N6N2I64z6w0mnr96pSqgqha4acHgFd4 739
ymp/conda_envs/latest/linux/metaphlan2.txt sha256=RrriJg53bqit0HvtQsLZLhebW9L7cJffoqC1MXl9dJw 10457
ymp/conda_envs/latest/linux/metaphlan2.yml sha256=PHq82R4a2W764EkaoDhe7sb2MQgPgEzVxr6CoZWi1UU 2692
ymp/conda_envs/latest/linux/multiqc.txt sha256=Oo68yn7eC8SNN0dw1fM8Kl5w1UMQr_6Rbdh-X0u2jo4 9253
ymp/conda_envs/latest/linux/multiqc.yml sha256=o4HpXKF6iUAinDZGyAGXwyCKa2wRsjC1keFRrVdSej0 2375
ymp/conda_envs/latest/linux/picrust.txt sha256=EqeVCIdUAX3cKe0C16RMIRjpmFnOJcZukJkRTaJ4fEc 16010
ymp/conda_envs/latest/linux/picrust.yml sha256=rFwPQP9g5_yQeNiM2qP_P5OgaZzq3wUnyRBufGmymE8 4162
ymp/conda_envs/latest/linux/pigz.txt sha256=UzW5ryEirPsYQTviC-pTDOgOqLOgienrgNLs0Yx2Hbg 824
ymp/conda_envs/latest/linux/pigz.yml sha256=_K_IgqyZuJv2m__R1nPfggq9mOZm1YskK3dgYT6rrdY 237
ymp/conda_envs/latest/linux/pilon.txt sha256=eqrxegDrPv2brpBpdxecps0x3FLKWFGU3Wwqt4mCa-I 7843
ymp/conda_envs/latest/linux/pilon.yml sha256=ar2nBazM4NeY-t8h-Fh50mEFos0gJ2pXDu6zk22fE-c 2048
ymp/conda_envs/latest/linux/prodigal.txt sha256=adcGZ18eiHt7PlXK3ZUYffctIsuFXbKKyBasWoFzcgg 712
ymp/conda_envs/latest/linux/prodigal.yml sha256=_cYacwrTzdy8s4eRaUygN_mb92iTXLUs6v8MG4xv0cY 219
ymp/conda_envs/latest/linux/quast.txt sha256=pyC6sf1_AOIdfHCke2gi7x81pZMwmdlUvt3bsUFTH54 21914
ymp/conda_envs/latest/linux/quast.yml sha256=s-pELLbfWfWUy4u2QxRQUdJWOyAmyFP6aeLeeE5FRuw 5965
ymp/conda_envs/latest/linux/raxml.txt sha256=nAy4qDT4bcBcc92HWwFppn8xCuxwuiP_hV9khCKpeOg 710
ymp/conda_envs/latest/linux/raxml.yml sha256=8333ECWr5hlMavvszdrcOqkXkwTkAFKfmXokGormF4U 214
ymp/conda_envs/latest/linux/rsem.txt sha256=oT7mi_ZDG6i__ofqssAT9ndfjK5DCM8y403wKBC_UDk 21481
ymp/conda_envs/latest/linux/rsem.yml sha256=icxJ5YZiWwga2K1t1ATsCxEM8c2u7zMCIXTA-K5hi2k 5855
ymp/conda_envs/latest/linux/sambamba.txt sha256=kNmiqrFkLfveNNGmVcJ_bkT0ABHqqTX2lizaubEhglA 2773
ymp/conda_envs/latest/linux/sambamba.yml sha256=hOG9lGivVqA886d3k0rCILNzANq-IC107r38xZDrWf0 717
ymp/conda_envs/latest/linux/samtools.txt sha256=wYMmDvGsuUIOZB8zKjLx0hCrGi9TbsdIl5llUrujMFo 2659
ymp/conda_envs/latest/linux/samtools.yml sha256=c0OiZbCgJUIX5c1g5ywPX43pwZ0QBZ0yiaP_wm1vkes 690
ymp/conda_envs/latest/linux/scnic.txt sha256=Jt07vTAjalwtEzIWy_plYG_i8ZMQYIMlG3qFYtaC20Q 14219
ymp/conda_envs/latest/linux/scnic.yml sha256=8o3q2uO4v7Nf9ZRWLzSgX39GPvSf7tdpS8151HbFo7U 3643
ymp/conda_envs/latest/linux/sickle.txt sha256=zPzjeAoyJnw805ancbk3kWpXY8MAZ3x9ejahJh_o9_Y 829
ymp/conda_envs/latest/linux/sickle.yml sha256=UnqndaKkD-yWvhAohzmoSOExZ2HtIwLHzIXDOOfNxlk 247
ymp/conda_envs/latest/linux/skewer.txt sha256=WXY4woMjD-Xz5WD-xVTklPNMpyxdTj78F3_d8QItC2U 830
ymp/conda_envs/latest/linux/skewer.yml sha256=DyPC6oCK206bVbEZPyq82OcUkyNys2axFWa2Bl5tnxg 248
ymp/conda_envs/latest/linux/spades.txt sha256=3k3PommXtjE1W1PLaSUGrbADXsumPyjare00cey1VrQ 3619
ymp/conda_envs/latest/linux/spades.yml sha256=i6aEKvkMpkXto362XhHIYP-Zhl0UShx7Mt5r9s9aPaI 963
ymp/conda_envs/latest/linux/sratools.txt sha256=H4a4jhaTlYWN4m5UJ9PxeQnlZAhD1qV90W4tkYYzyMk 5471
ymp/conda_envs/latest/linux/sratools.yml sha256=8Cd6Ayf72ViTN-BvdA-jQphS028BDwC0mCPaWLjwtyU 1473
ymp/conda_envs/latest/linux/star.txt sha256=RbTENw3zCvLLsAQgy9KQRtlX-57GsZT4940CbJ2PoVU 236
ymp/conda_envs/latest/linux/star.yml sha256=ECaeuF4D7-hJgNa_3UV7XmOzVHxOzU-0QNyuTt97BOo 87
ymp/conda_envs/latest/linux/stringtie.txt sha256=s3uxta8tLvVitjy4RSNtHU-RAe8l-qBsoaByQzZRIRI 2793
ymp/conda_envs/latest/linux/stringtie.yml sha256=o1j8_7srizN7ESY9UYf7AdxldzH_inCof3hRSlIBOz0 741
ymp/conda_envs/latest/linux/trimmomatic.txt sha256=9b7hVN-cXmYaXFLD7WrEKuQT5fM0G_78IbkICElvpt0 7731
ymp/conda_envs/latest/linux/trimmomatic.yml sha256=6v9zPaiIvH9Q4N0fJoBHJzHcwcjX9aq6nmfEm88mOLA 2029
ymp/conda_envs/latest/linux/trinity.txt sha256=uxNeHXltZLAH4jiFp0HgZjztMsQzlAor7GUiiHNt2qs 34453
ymp/conda_envs/latest/linux/trinity.yml sha256=HHupE3DQo5lXgmp9DuT0Ur-cd3HtVsSrnzvfQ2mbzWE 9498
ymp/conda_envs/latest/linux/unicycler.txt sha256=w3094sezLxqEGN4UR0P1dFRLhfCog7y9dnNimf7bcm8 18113
ymp/conda_envs/latest/linux/unicycler.yml sha256=yWYwW8j_mDcMDPGHQhtZ7FquaR1voCO6wzyWtvXJC2k 4888
ymp/conda_envs/latest/linux/wget.txt sha256=SlA4vE3IQqOSp5p1TrZ-5XObamrNaMbkaTKI9MTZb1A 1653
ymp/conda_envs/latest/linux/wget.yml sha256=25ypLke6m_FfGdU5JuJrWEeqzu-D80vPjClHQpUXv-E 457
ymp/conda_envs/latest/macos/ballgown.txt sha256=fW0qBJRr3WSKM_1qF-UmJBZtxlMzmg0zMN1kRSieTfI 16751
ymp/conda_envs/latest/macos/ballgown.yml sha256=TU76WG-HhQHiAL8OLCjOZMYtIvzn0uP6Ysd9VEne8H0 4697
ymp/conda_envs/latest/macos/bbmap.txt sha256=kj21cZYEIu3SVvFGrnh4VL6yDnsEM9U3-RFYkpAjum4 2818
ymp/conda_envs/latest/macos/bbmap.yml sha256=BHWciUk_ZwULmFW-3xf9f_ThTvtyQcEdR7VlqW3dNzA 728
ymp/conda_envs/latest/macos/bedtools.txt sha256=7iOAOoqSRjTEdpkqHS55Hlj8e5FEW4OSBwDhOmdsuAE 2262
ymp/conda_envs/latest/macos/bedtools.yml sha256=T3p1DBTwkU5a1HsIRrep78np0TX3t_fl2PO7OAkTjnI 597
ymp/conda_envs/latest/macos/biom_format.txt sha256=_REqaKJe-CBjk6Prg7rfXtSTEw_e-Qrvf6EuCbY4FE4 4211
ymp/conda_envs/latest/macos/biom_format.yml sha256=DAoyCw-XiVpV5bo8XOYbupmgvHlFiL3m3JWhVQWRRPc 1104
ymp/conda_envs/latest/macos/blast.txt sha256=636E9vxVcooVRvbzu1VeTwEVeI8EHqoyJvYYkxo4-VE 9461
ymp/conda_envs/latest/macos/blast.yml sha256=G1BcA553y9DObn6GpA11q4YKmia7lE7TPPYg0g_G0nU 2697
ymp/conda_envs/latest/macos/bmtagger.txt sha256=LnF2UszP3uSpmhQB4_GU6yGlb7lIauGiSKQckX6D7og 10542
ymp/conda_envs/latest/macos/bmtagger.yml sha256=hJA1G0N_LXxfNmzvJtW76ppHNWSOKtU9-xqtWhKeczY 2949
ymp/conda_envs/latest/macos/bowtie2.txt sha256=HIn3u15OXHwLwPQhd2QslTMum5YjkPfq3xkkl8vUV7U 3618
ymp/conda_envs/latest/macos/bowtie2.yml sha256=a99v3FyylhB9dnJMbZAT2rhYRJSfvm-QEwoH7lNRQYw 932
ymp/conda_envs/latest/macos/cdhit.txt sha256=vbLs5ITnvMwxNNNMZG0hkwUeP9MxJYuC52BzxMcGYag 685
ymp/conda_envs/latest/macos/cdhit.yml sha256=gaGMKwHcOOjjnrmLMeUiD1vuVQkILXLyuS53T1awIqI 201
ymp/conda_envs/latest/macos/centrifuge.txt sha256=1v9m6QtSX_O7rjGsPqm83MQrMzCvb7bTPMCUMIXviFY 2627
ymp/conda_envs/latest/macos/centrifuge.yml sha256=KTY87oyl-qu7USCzzbemYID2BEI5QiMwXjrAUK5GpRw 703
ymp/conda_envs/latest/macos/diamond.txt sha256=qhmlcv746nt0tdBPIBfCAGMwU3-m9vcS9diZ4FHwj2w 2701
ymp/conda_envs/latest/macos/diamond.yml sha256=s6zkDDjAhwSGBGDP3Kqaavo62d5yoEi67Fl7bhPZO78 695
ymp/conda_envs/latest/macos/fa2fq.txt sha256=ty4oDiF-sDx7ln-bTfzbG-v_LxAm78Xc4j9Ukro3tFI 914
ymp/conda_envs/latest/macos/fa2fq.yml sha256=kcphEB7g--HucxgmaYRKnudCBrbZG89Ucq4kEptHz20 257
ymp/conda_envs/latest/macos/fastq-multx.txt sha256=9sWxyJtqdh-cPKFFU2AX6n9oJ2FHHRlh1CjUlMx91hQ 579
ymp/conda_envs/latest/macos/fastq-multx.yml sha256=tbYaW29VmxRIEajaMshkmzjeKBcePRbbKkbQMyT_EJg 186
ymp/conda_envs/latest/macos/fastqc.txt sha256=A1pNb5VKniR2KtTeL1vd3gTvZgKiql_T5IuxodrPCmo 1606
ymp/conda_envs/latest/macos/fastqc.yml sha256=Y0ARfJGB7jd_o1QCYJv81cfKbXeWjzMbua0zvCNaFuw 443
ymp/conda_envs/latest/macos/hisat2.txt sha256=k1uZAQNPUGUuhea4leRBqcnHmYt6EWLpjUeQSG15hgo 3401
ymp/conda_envs/latest/macos/hisat2.yml sha256=b5N5IPjQrv1rNnrUdLthvwsDu7MDoQk8bxWEUXv5cl8 884
ymp/conda_envs/latest/macos/humann2.txt sha256=L6Tkj3xPI_elANpse74ZiVeyolX1JEb6OvCyO7f7eTQ 7883
ymp/conda_envs/latest/macos/humann2.yml sha256=pwC53muTlCyO0odSaT1B-bdhrO0qA_0UaNtMi1F0bBg 2064
ymp/conda_envs/latest/macos/megahit.txt sha256=uj9t2kZuak6Zl8XoKZlJWeTdupJ4VhCWOkjHbCDeJZY 2841
ymp/conda_envs/latest/macos/megahit.yml sha256=gJ4CljdiD1gAUmtKjTkD6lDjsr0ZS4ZgSZdMeUrQc2w 744
ymp/conda_envs/latest/macos/metabat2.txt sha256=EMIdGX4wZhlEJCruKrtPwuMhgsJr82ATfeYSYQSkP2Y 2487
ymp/conda_envs/latest/macos/metabat2.yml sha256=QZ5QcdPSyLrbbhPqCCwaDNlG9zY0V6APu0G3DWn_qG4 649
ymp/conda_envs/latest/macos/metaphlan.txt sha256=gSEgFZ_zXNU4-j_bAuOTN-xkmRL8g8R3Oz7ji7r5Ypw 11703
ymp/conda_envs/latest/macos/metaphlan.yml sha256=PixEk7b2tNvDv_53VVES6tBqKpFM1vHcaa8mveLiAck 3032
ymp/conda_envs/latest/macos/metaphlan2.txt sha256=r5hFCVwHKkc8mUBRiNTaFi_Zc-9VndTGnFK7wI2rOEY 7456
ymp/conda_envs/latest/macos/metaphlan2.yml sha256=D_i9P2SZIGnSoS8Nmh_hAwqjx30RGB339SclKvFdRwY 1968
ymp/conda_envs/latest/macos/multiqc.txt sha256=4wJjHluXzJEvZLKTN8kXFHw7N92O7KMUPwaPp12z5gM 8681
ymp/conda_envs/latest/macos/multiqc.yml sha256=NSSFdYL38xBKAkjyaygWzAO-15E4GGBi1_v-4WpfVok 2249
ymp/conda_envs/latest/macos/picrust.txt sha256=FWsWuGLH2eOs3Mv_4il55iYF5gYl7yYtpJngIwUvh6w 13039
ymp/conda_envs/latest/macos/picrust.yml sha256=xsNtcoydzivPWqv9PTqCmMyMI1jg4CFaMnNBoOYTPA4 3380
ymp/conda_envs/latest/macos/pigz.txt sha256=iuZxByQ9rgCcPDqE__GM02RkiNg6ocLlem617W1b-2c 354
ymp/conda_envs/latest/macos/pigz.yml sha256=CdFTLbbtrPi9SI6VH4NuKnFlyNO1BWt42DhqHA3NDXU 121
ymp/conda_envs/latest/macos/pilon.txt sha256=aB2-GcCSt1hZlZWdcNP7dOy4bxgTK8xMYaQ2woJa2Ww 2384
ymp/conda_envs/latest/macos/pilon.yml sha256=y5egvCvaMVhEJDqR_X3uHOKVziHSerZnPhQlTPm63LU 625
ymp/conda_envs/latest/macos/prodigal.txt sha256=wDMcqrDjPIJiRkEOD-4O0NmjiaoUo60eIF2at24JJo0 244
ymp/conda_envs/latest/macos/prodigal.yml sha256=pnCSl_b0EnOUr-jLTOzTehYU6mwrmRD8uzJCOuXhRXU 103
ymp/conda_envs/latest/macos/quast.txt sha256=rZvu8aVI66VAjkKjFuXdA0-Bw6xRZULHADumOs-G0x0 17667
ymp/conda_envs/latest/macos/quast.yml sha256=RuEQ1_jG5Oa61a_6RoKsSSg7r2QQxGpRZ2F92YaHcO0 4867
ymp/conda_envs/latest/macos/raxml.txt sha256=ZemOCoqb1CivOXQ44mS8Q-R3dwxV9RiX7PGqUiGDnqU 242
ymp/conda_envs/latest/macos/raxml.yml sha256=m5tzcnlGgyLRarydNIj6C-s8gqb98Ypx8awe0mRx8ek 98
ymp/conda_envs/latest/macos/rsem.txt sha256=hBcoc1zRFCPVCcZGxKhHBSS2Kgvxs0R_2TBw3h0SNjE 16634
ymp/conda_envs/latest/macos/rsem.yml sha256=r_sKpFPwXi3sWvzmeHNv554oy-3JNpC3jmsIXgsbiN0 4443
ymp/conda_envs/latest/macos/salmon.txt sha256=56hMTmg2PYlVQ5X-I-bLELjICZEO_pYdwBZs7v-tctA 1347
ymp/conda_envs/latest/macos/salmon.yml sha256=Aymxjte0x2fSgcyrSP_T1tcpdIqORRZCjbD01NtTDKc 354
ymp/conda_envs/latest/macos/sambamba.txt sha256=71WsvWtRL72wWLsFQuIQx0iBippQvHNVJlvFLmkYOwM 2263
ymp/conda_envs/latest/macos/sambamba.yml sha256=KOK16RWyuniCvMeJd_CHymXMnDTsbI9FCpC36HB71G8 595
ymp/conda_envs/latest/macos/samtools.txt sha256=qTAAUCN46MJFCNylqoLdiyMbD8nicAAPcrBf0UpN9os 2151
ymp/conda_envs/latest/macos/samtools.yml sha256=FQ7YL1nmwRjece0LDSLM786RKr2dtbu1eRM0I5Q2Bh4 568
ymp/conda_envs/latest/macos/scnic.txt sha256=COvA_pIJDxjnAc21LbddLBb93pf-9QKYCofTaj6KXvY 13842
ymp/conda_envs/latest/macos/scnic.yml sha256=JplDUR69wcen4GhMMDfaQsD7qJz9igC-57F75kto-u0 3589
ymp/conda_envs/latest/macos/sickle.txt sha256=QnYicZ6sV2ETIRqMtzxernBHBR9Wlu8SzZWJPRdEKVs 359
ymp/conda_envs/latest/macos/sickle.yml sha256=66BmLVDeYurjVNVnLpLeitvY2aSy68e13sSS2JS7nqg 131
ymp/conda_envs/latest/macos/spades.txt sha256=ctmYVmhcN0CAZawtk6bjIuV6qFMCLSyciu9H1jdDeqs 2499
ymp/conda_envs/latest/macos/spades.yml sha256=t5r4D78mdHt-7PgbmQCcOBvsZRfqp8WasBxjcCBspBA 656
ymp/conda_envs/latest/macos/sratools.txt sha256=VuDR5CXUZbmZ8kXIfCStaG1Hsar1auWuQp_Mu29qcK4 3903
ymp/conda_envs/latest/macos/sratools.yml sha256=na4sc3csMr5GGaR9KhsfhzVnKsmnofTe0A5W5WPeLdc 1102
ymp/conda_envs/latest/macos/star.txt sha256=QwJ6MSbuPfSeWT3TTkBCusGqDP_Y1OhNleKT-EEQEbs 241
ymp/conda_envs/latest/macos/star.yml sha256=oEz1hKBljUuZwR0-4tAWQb1h0uDUj0lym_mYiMY-pZw 96
ymp/conda_envs/latest/macos/stringtie.txt sha256=FqxXFjAFQeZ2X_TXnd_HMCI7QOEu1PuecH3bsciJLaU 2167
ymp/conda_envs/latest/macos/stringtie.yml sha256=f1iOXTaJqrI3nHjWNLIze-HuG7rCsa0Apr5NSMF5J0s 582
ymp/conda_envs/latest/macos/trimmomatic.txt sha256=irS1LecwD9B1robwzyJZvsB6u3a_Io21AsJdrGp8Kf8 2274
ymp/conda_envs/latest/macos/trimmomatic.yml sha256=q4gRq39h3pjv8HLTWdx9QLepZ5YMIcKazOZxrwMGYB8 606
ymp/conda_envs/latest/macos/trinity.txt sha256=SMVH6sNQcQDTD1_3l0OMD-MK2m7ehjSAAU2w4YDoMSo 1129
ymp/conda_envs/latest/macos/trinity.yml sha256=u_q74Oo88hegEKZdC4-b40GV3PCjH7qBWQRU67mO1TQ 307
ymp/conda_envs/latest/macos/unicycler.txt sha256=ggRrjmhN1pez55XhKYDE-c_4WIi23meqLGRRZMmkMUs 12148
ymp/conda_envs/latest/macos/unicycler.yml sha256=Yd1WR4_zOfa0Uqt5TPAAYLSycZpEnchvQRG7dnLUejU 3375
ymp/conda_envs/latest/macos/wget.txt sha256=RYdnAbsF4JfwF5k0-PTeRk1sy6jMOtheL-7vrjdS8z4 1275
ymp/conda_envs/latest/macos/wget.yml sha256=fMuUxCWP5h45ZKyQlsy6THKDNdRvn7nRoztVkYFX_hw 362
ymp/demo/ymp.yml sha256=UjBbGZP_1zrRu4ad-m03D_OsNw-x0HLoDIWlCCaVoTk 3972
ymp/demo/mock_data/genomes.fasta.gz sha256=PQG6cgMA3a5krO6k4n7d2H__zBAXLoMgdrcECkA8COQ 4900
ymp/demo/mock_data/mock.csv sha256=XGkQZqT319QSek0qXZyJN1UYb_N1jU-rxjYpsrKgKM0 150
ymp/demo/mock_data/s0.R1.fq.gz sha256=fABSka8HGRwSwP964AjjdAMFJCdyWzZN39gIodTGHGk 74051
ymp/demo/mock_data/s0.R2.fq.gz sha256=5AkcXSeYU-_iwFXrggjf3Aw7enBUI-KM6pKHwnDNHjo 76368
ymp/demo/mock_data/s1.R1.fq.gz sha256=mPLGJlzKr7xlAOeCBiDufc6CF0pijvGUX2Edx8Yqotw 73597
ymp/demo/mock_data/s1.R2.fq.gz sha256=ISYuxJEmMNAoF2YAj4k8vqRP4wdDCEasu_AMO1tJaKA 76203
ymp/demo/mock_data/s2.R1.fq.gz sha256=wX0VTN4FTQUuFIsgmQbmzxjlCUs34HZO8Rq5-JCCg_w 76778
ymp/demo/mock_data/s2.R2.fq.gz sha256=O3ivO4-Z1JCVjVdTUXAgKTIABNCcZzPJo4KJRuafGgo 78906
ymp/demo/mock_data/s3.R1.fq.gz sha256=-0AFET-uCpUAoT_hYQXUdVtpL8CfIUEkjIG15s2O1sA 76708
ymp/demo/mock_data/s3.R2.fq.gz sha256=7P6PEN1QsfPNqYftu8MLeEQqUQl2CRYfJ-mXQ2GQdN4 79366
ymp/demo/mock_data/s4.R1.fq.gz sha256=5kslg36F48YqzPdBfvVCkY6sYMT9CWFQIVyD-rloOVc 76144
ymp/demo/mock_data/s4.R2.fq.gz sha256=jkuDcxXgoryfJrQhgrrbcb7bc5KXc96M5qdD4p_ktXU 78902
ymp/demo/mpic_data/README.txt sha256=hgrnte1rPosp8QCg5IuSsGS5_BRJfMVJsdkfl40TZ5k 205
ymp/demo/mpic_data/barcodes.fastq.gz sha256=iINCpLWWD_cPM7P6Xh3l7AvYnvbgN4sDV4On3JIkuD0 22578
ymp/demo/mpic_data/forward_reads.fastq.gz sha256=AEvAh5-ln02ETk2AU5xOlnU-3-9q9dAsty4qAufHU_0 149076
ymp/demo/mpic_data/map.tsv sha256=0MmTZLbNRAMGBT19BHFYC03B_ytCBRL88zcEmwcXFIk 464
ymp/demo/mpic_data/primers.fasta sha256=V3TuE0tHbrsilXqnZjb1dR4Utw31gcB_hKsjzuqkXZM 18
ymp/demo/toy_data/README.txt sha256=N2_dxvK2UpX-6oVfT7zqBpIlDEi4VlTPpxF2OTzLkFU 53
ymp/demo/toy_data/ecoli_1K_1.fq.gz sha256=cPswvpQMjZr9U4LleDwf9PC-HYaFfQGR056yO_qU-28 117212
ymp/demo/toy_data/ecoli_1K_2.fq.gz sha256=DiNwW9Onc4OtHr2SUs3QE9_Jaft48-um6dk3Vrd7f7E 121563
ymp/demo/toy_data/genes_1K.gff sha256=cjZWhvCq2RePAKpnfV1iDfOXNU6VfbAOz-_RaCNM0TI 132
ymp/demo/toy_data/operons_1K.gff sha256=z_0MPmF7526d0pARcF_QHQOsW2Pwzy4yHKMZGEOSQsU 74
ymp/demo/toy_data/query.faa sha256=PfMipRc2leQdkVBUne1Ime1zkXdd2P9dp_Ouks_ti2s 104
ymp/demo/toy_data/reference_1K.fa.gz sha256=tqALOAKHxRZ_CfzzAcmpEg-xiUO7utuvgZAfqWXfSCI 534
ymp/demo/toy_data/ssu.fasta.gz sha256=xmbTzenubTxeHki4szvFFmmfdXPsuiWUYg_ub_1Uf0U 1148
ymp/demo/toy_data/toy.txt sha256=oT_sujvHaEWEx9aovUI7qO9faLh50cBccDxKOVPm_OU 136
ymp/etc/defaults.yml sha256=VGgDzD3qMgir8lEACOTml9949SZWXmOwRvQJYTC33wA 9616
ymp/rules/00_download.rules sha256=fXsbbqYWWxstK-t8ZmSo9Y9uD5PQtJ1HthruFf6XZ3I 4411
ymp/rules/00_import.rules sha256=GU24aljV-k-nsEofUqbdyv63XoYwBtpTYCCsXTj-yVo 4659
ymp/rules/Snakefile sha256=QroeCE4xaGE0FjQZvL-hkGIbiUhpYoBZ_ja-Uc25HuI 1442
ymp/rules/bbmap.rules sha256=bjXdvk-tzUgmxdCzUdvAFBRDQ_BLQMZEmu5iut99rLM 19805
ymp/rules/bcftools.rules sha256=X1OcYduK1uJX0b0tot3HGv9D1QEqjpip3otfmGdffDU 4588
ymp/rules/bedtools.rules sha256=XgRwHcIpZGsjpgciNGwK2I-IkrCtsgW9hEVsPc_cUmg 1242
ymp/rules/blast.rules sha256=juDhXMTEcWfSOOSlgBfg10nq7Pz7YlWX6zh-xz_Y4ms 11497
ymp/rules/bmtagger.rules sha256=8MgcAR4ejrgcCxSV3QwHZM0D9436t2ENd_-bMJVU0YQ 5284
ymp/rules/bowtie2.rules sha256=rZgv4rK0KtQsmVxXG3G13FMMxNjiuObL17IHc4NAfk4 5079
ymp/rules/cdhit.rules sha256=el3N3p4H7l_2C6i-oCvDNn10FTQNpBPtw01zwxf_Kmk 4911
ymp/rules/centrifuge.rules sha256=F2qLPJ4aRxQzIjcpPqHnL4RlZ3nAlhkNGpMKwBnM8Bg 1243
ymp/rules/diamond.rules sha256=PUxouxQnBYkGmAmsdXvd1YsfjsiIJ743tWKQ_lHEg28 5448
ymp/rules/fastp.rules sha256=oAQ8fOU8dW0ptMr2YQinjrqUY4PT269DaZCutyXBy_4 2354
ymp/rules/fastq-multx.rules sha256=JDmpSmXPtiDRuptdJMP0ObJ95GuoBWYMElU5Wwefd90 1585
ymp/rules/fastqc.rules sha256=DCwXgL1Pt3UOpoqxb2OUAgUkuXiqmtGkJ0DJE7bmRSw 1954
ymp/rules/hisat2.rules sha256=7oGnaPr3dfcs_RQOW2p2-PgCwMcz4xDRMN61fR6vF4A 2260
ymp/rules/htseq.rules sha256=qSSIZG1JYkmoy_MgLfY1iRoyskCDxlzGe4UQ2FMnIIs 2203
ymp/rules/humann2.rules sha256=b2g7t1zmVen3QhrifkdFowtlxbTD3qwV2t9ex0itkz4 5073
ymp/rules/megahit.rules sha256=YhWm7aLnb4IySWtxzHB9s9xVQih6dcdpSlAdkpHn9sM 3868
ymp/rules/metabat2.rules sha256=cdpILRwyVdda5SlI_zcpVWK0iimMfa4FtcLpRVPiJoE 3308
ymp/rules/metaphlan2.rules sha256=MWNpEpAVVq8heNUw4s_QamjFF6JGSBB0Kw9bHvpjHOs 2618
ymp/rules/multiqc.rules sha256=NOgcZOdjgqzTk4Dq52ILIKsQcnoT5fJE_o_IEZ4gdJs 2643
ymp/rules/picrust.rules sha256=0Hme6ZQrGZ0jByYhSe9QuxZPaATck9U-QV_ukMiaFfo 1515
ymp/rules/pilon.rules sha256=mDk53xUWcNMwvh_tv51X7B6sOJm1wbtgkWZkZ5WgSKQ 2569
ymp/rules/prodigal.rules sha256=w2mju6P_70SakvtNUFBjkP3ViRN7dtxfa7R87q6HXAo 968
ymp/rules/quast.rules sha256=gJ2AEVgEprEmmUB9N2jsdldiHCtg3EtemdQ2yHXW5Ww 3001
ymp/rules/rsem.rules sha256=Khy8C9xis9S0bTJ6PZ7qN17S_uXSEbQ-s0HDwIoT8_8 3467
ymp/rules/salmon.rules sha256=0qzA-40aN4RqMHeHH_eHpdiPfwp-etw9m4peD-ZyPb0 8069
ymp/rules/sambamba.rules sha256=6uuIIGXWX_OnfHo0qEyYRfuK705UXINCOMOdX1Y-45Q 5628
ymp/rules/samtools.rules sha256=5h71zFjBOVbAxbNm-v8SgB1WH7_HxCMjzutXr1YIHMk 6397
ymp/rules/sickle.rules sha256=Y32OCgJvuAViekZGLI2gSLAD29NExuNdQeKYQ5-CobU 2449
ymp/rules/spades.rules sha256=jYG2fLNgmKMXPewvdAeyz2ZX-2LwqSbt3WQNGyk3wUk 6690
ymp/rules/sratools.yml sha256=Ryh63o7s7T_v5pzTT_t4wCEQngKiQNsj4qjVqCCJpBM 76
ymp/rules/star.rules sha256=61wmffWhcnvyJOo6VgF7Ew_o-71u2tAlID0n9TYHhh4 3880
ymp/rules/stringtie.rules sha256=p90ngY5qLfKho-sJVfCvVceht7c0OPcUZKfZ7BI14jY 3447
ymp/rules/subreads.rules sha256=Pje0hi7BsqyC0zEHNM03ee4KAlnlVwiqACO68VRwjec 1717
ymp/rules/test.rules sha256=TenObnIlGUHRVNPYiAaPSBoKrkcxajE9ncAxjTtg6-o 1999
ymp/rules/trimmomatic.rules sha256=KH0J5tx9uZ5FeOj7bGJ34Q6fmmnnvklVp6ZMQaoslAg 3208
ymp/rules/trinity.rules sha256=V-C-pOX-zLujIsp-3_ehQR4f99f7D5x1vDV8FphZQNk 2821
ymp/rules/tximport.rules sha256=9fTuqg-YS3aMRI09Yirru2N5Q2YGbiZPyCyd_d3fsCQ 1485
ymp/rules/tximport_rsem.R sha256=Xx6TYGJTuh8SznjxEcWx8HZdeZJWz98GIElxLyP7fzY 3030
ymp/rules/tximport_salmon.R sha256=xXgO0oNisIBQI37-10bgs72dNRisZQ7wwOKehYPqo6c 3158
ymp/rules/unicycler.rules sha256=chVoB4Wp1ZhAAVPi0PzDebL8jM6lCKdwfRtAdxQA3-g 4081
ymp/rules/wget.yml sha256=42Wl6P8__NHYb0Q10ULWws9fFYseNYq68NZ3MCLL70E 59
ymp/stage/__init__.py sha256=5yH1tr7i-lePlKXZ62XqHipbxUQzJFvPKpfCkHyi5Rs 710
ymp/stage/base.py sha256=bq9eL58rAolMTWbVsMrSZAmmgMixpRdM5swZvxKO4Rk 10414
ymp/stage/expander.py sha256=CeO6v4Qn3Jzl_AjKAVaWOeccFLwgfdRguF5lr9D-5Ws 4885
ymp/stage/groupby.py sha256=-IMxUjKbGf_rEcl6w8oGNT81bRUgZlhaNvMxJeTHMQg 2060
ymp/stage/params.py sha256=9n-QPABETx9rJ7cY3RbniVkC3F56rWd967HzWCQtY6I 7149
ymp/stage/pipeline.py sha256=TDEVo3NGVX8D3iov2m5y_WJ9-UUnW5PfRkSV_ij4OMY 8366
ymp/stage/project.py sha256=rtIT1rEJT8KX688yzZzmt28EBnIz2YCP9_Sg5NHGAFc 22302
ymp/stage/reference.py sha256=SzjtV8Zmrkv5RLsWedVqUQrzAC58VIV89iZNQgeyeOw 14817
ymp/stage/stack.py sha256=03DF5vOlnorCm24jUeYFKUPZ0fL8S-dgqeaQVuWuJQw 11869
ymp/stage/stage.py sha256=3GFnJZeqbeze07aA7nWUeGDZ7TeO19cG1l1h8WZElHg 11556
ymp-0.3.1.dist-info/LICENSE sha256=WJ7YI-moTFb-uVrFjnzzhGJrnL9P2iqQe8NuED3hutI 35141
ymp-0.3.1.dist-info/METADATA sha256=gkqENHze11EOTY_dwZ7tiSbH-FMkYd6voesi7rZnlvw 9017
ymp-0.3.1.dist-info/WHEEL sha256=eR3RPK6asVseOax1TFEq4uuy50WvB7aLgj5EflQ5O0s 92
ymp-0.3.1.dist-info/entry_points.txt sha256=Xj3WeJ-M_WOq9VRNlg3MetXz7xmgIE4anTwk5jq8swM 37
ymp-0.3.1.dist-info/top_level.txt sha256=EphrjW830ow86M9anDXTCuahww7ZtzWbpvtVfVTxRqI 4
ymp-0.3.1.dist-info/RECORD

top_level.txt

ymp

entry_points.txt

ymp = ymp.cli:main