Reverse Dependencies of xopen

The following projects have a declared dependency on xopen:

• bakta — Bakta: rapid & standardized annotation of bacterial genomes, MAGs & plasmids
• capcruncher — An end-to-end solution for processing Capture-C, Tri-C and Tiled-C data
• cdhit-reader — CD-HIT cluster parser
• celescope — Single Cell Analysis Pipelines
• chronumental — Large timetrees
• cutadapt — Adapter trimming and other preprocessing of high-throughput sequencing reads
• dgenies — Dotplot large Genomes in an Interactive, Efficient and Simple way
• dnaio — Read and write FASTA and FASTQ files efficiently
• dreem — DREEM solves RNA structure ensembles using chemical probing data
• fastq-filter — A fast FASTQ filter progam.
• fastq-handler — A python module to process minion fastq files by concatenating reads as they are generated
• fastqsplitter — Splits FASTQ files evenly.
• filter-illumina-index — Filter a Illumina FASTQ file based on index sequence
• findontime — A tool to upload Fastq files to the INSaFLU database and perform metagenomics pathogen detection
• finna-crawler — Crawler to download data from the Finna OAI-PMH API
• gff-io — GFF file reader/writer
• IMMerge — no summary
• MassiveQC — Tools for QC massive RNA-seq samples
• matsim-tools — MATSim Agent-Based Transportation Simulation Framework - official python tools
• matsimtools-ifpen — MATSim Agent-Based Transportation Simulation Framework - official python analysis tools
• metafitch — "Metadata ancestral state reconstruction by Fitch's method"
• nextstrain-augur — A bioinformatics toolkit for phylogenetic analysis
• orjsonl — A lightweight, high-performance Python library for parsing jsonl files.
• pgscatalog-core — Core tools for working with polygenic scores (PGS) and the PGS Catalog
• pixelgen-pixelator — A command-line tool and library to process and analyze sequencing data from Molecular Pixelation (MPX) assays.
• plotgen — A plotly plotting script generator and data parser
• pytest-workflow — A pytest plugin for configuring workflow/pipeline tests using YAML files
• referenceseeker — ReferenceSeeker: rapid determination of appropriate reference genomes.
• sam-io — SAM file reader/writer
• sam2lca — Lowest Common Ancestor on SAM/BAM/CRAM alignment files
• sequali — Sequali is a QC tool that generates useful graphs for both short and long-read data.
• tadrep — TaDRep: Targeted Detection and Reconstruction of Plasmids
• thapbi-pict — THAPBI Phytophthora ITS1 Classifier Tool (PICT).
• ultraplex — fastq demultiplexer
• variant — no summary
• whatshap — phase genomic variants using DNA sequencing reads