whatshap

View on PyPIReverse Dependencies (0)

2.4 whatshap-2.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
whatshap-2.4-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
whatshap-2.4-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
whatshap-2.4-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
whatshap-2.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
whatshap-2.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl

Wheel Details

Project: whatshap
Version: 2.4
Filename: whatshap-2.4-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Download: [link]
Size: 1229940
MD5: 29be6c280135b06f3d92c608489430cd
SHA256: b76ed97215231353465631bba3312bdcb9d43f369ba0e30f51a461d9cee2e955
Uploaded: 2025-01-22 10:42:55 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: whatshap
Version: 2.4
Summary: phase genomic variants using DNA sequencing reads
Author: WhatsHap authors
Project-Url: Homepage, https://github.com/whatshap/whatshap
Project-Url: Changelog, https://whatshap.readthedocs.io/en/latest/changes.html
License: MIT
Classifier: Development Status :: 5 - Production/Stable
Classifier: Environment :: Console
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Cython
Classifier: Programming Language :: Python :: 3
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Python: >=3.7
Requires-Dist: pysam (>=0.18.0)
Requires-Dist: pyfaidx (>=0.5.5.2)
Requires-Dist: networkx
Requires-Dist: biopython (>=1.73)
Requires-Dist: scipy
Requires-Dist: xopen (>=1.2.0)
Requires-Dist: pulp (>=2)
Requires-Dist: Cython; extra == "dev"
Requires-Dist: pytest; extra == "dev"
Requires-Dist: sphinx (>=4.4); extra == "dev"
Requires-Dist: sphinx-issues; extra == "dev"
Requires-Dist: pysam-stubs; extra == "dev"
Requires-Dist: sphinx (<7); extra == "docs"
Requires-Dist: sphinx-rtd-theme; extra == "docs"
Requires-Dist: sphinx-issues; extra == "docs"
Requires-Dist: sphinx-better-subsection; extra == "docs"
Provides-Extra: dev
Provides-Extra: docs
Description-Content-Type: text/x-rst
License-File: LICENSE
[Description omitted; length: 2054 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.42.0)
Root-Is-Purelib: false
Tag: cp37-cp37m-manylinux_2_17_x86_64
Tag: cp37-cp37m-manylinux2014_x86_64

RECORD

Path Digest Size
whatshap-2.4.dist-info/METADATA sha256=fl0_CykyeK8-xd0M_3s6mekyZ65fqzgcwqHdaLP4ahc 3420
whatshap-2.4.dist-info/RECORD
whatshap-2.4.dist-info/top_level.txt sha256=mYHfbaJySViMsYkAfR5KhniFwq9QaTYKooVWfZ4epOQ 9
whatshap-2.4.dist-info/WHEEL sha256=XTrbe1v1RZIwaNy2ykqZ1b32V5o3CvHsSToseXBj9JY 150
whatshap-2.4.dist-info/LICENSE sha256=v3wmOxxCvM-P2hRcEY__q3w4K1vXPMy6uSUgLeDIhwI 1154
whatshap-2.4.dist-info/entry_points.txt sha256=ld4bwF0eV42FSTvTT-Mtyxg79g4Se_wBETpWlqv8ak8 52
whatshap/readselect.pyi sha256=8dkqs-ZJmgx_achE1v7EbUGLE4fn3ulZla065keIcT8 225
whatshap/variant.py sha256=6arO95qJ8oz9kSdy6g8vnzJP06W9pxwoIC3mZgqX0jI 151
whatshap/types.py sha256=1zGPhKwZHrDc6LYqLaVuJiPi6MoWege9Ys27xfRope0 385
whatshap/priorityqueue.cpython-37m-x86_64-linux-gnu.so sha256=tt9iQT67sjY5_WZpXmuRD1io_p0mZ2lCbYxY0bDJsa0 115520
whatshap/_variants.pyi sha256=2znINJLv2aINu99b6h9bqCGkLU3n_VgfhAo6KajZ-2k 524
whatshap/testhelpers.py sha256=UOZP01FqMv6kRXQ2YXSbT2kBTNTwVcmjvzFehEQpt5A 6702
whatshap/core.pyx sha256=fVdXMYcQYv6cu003t51RAgSoN2W0fIMiwz4d4rt3ZDk 22191
whatshap/merge.py sha256=xUCm0HQQ0hr5QodjpeIt0byTFVXsKd5SOdmFg2gOs4w 8757
whatshap/timer.py sha256=b8Svqn38muaU06RRfTw0o9uHtAMBpNe61kSscOIyD20 1938
whatshap/coverage.py sha256=OZT3rHFdMoak3lOwHfrZpy_rvjqBdJDQtJq282Byrtw 477
whatshap/core.pyi sha256=FugDNCKsO5dVcmWzry7fsv6FnHCrU6TG4YViKyhD74Y 5991
whatshap/align.cpython-37m-x86_64-linux-gnu.so sha256=IsBMtvQS0Z_ksY8OyG3VDpECo5o0gJ2zbwHoGbHQRLA 307440
whatshap/.gitignore sha256=j2fpHMFTXB4pQCWoOjB_QSMvds7ULC9C3eMBKfc8ShQ 21
whatshap/variants.py sha256=lVgQ7O_WD7k1ibAFbn_oiWIJMgQPqExZ75B2Gun5Z4Q 35201
whatshap/__init__.py sha256=aPVwgzRH8vYRfi4AxwgfbCSI93QB7Twl2jwvzq4NCz0 346
whatshap/bam.py sha256=ylf27E-1ynxKk9AV5vuTLHOmMVWm31uo3cKS3XjNnp4 7268
whatshap/_variants.cpython-37m-x86_64-linux-gnu.so sha256=I-QPVeX9oyr3KbsLGB4tPMvVnn1QxTd0Rx9jzMXRALE 188648
whatshap/__main__.py sha256=MTh-ZLnIh1BufBiCVoN2B5biPRFv0UKm9V4zIerQztU 3700
whatshap/readselect.cpython-37m-x86_64-linux-gnu.so sha256=fcLcytiZzI8ymBAWixYLSyFFZjRh-8H0EldB1jl8F6Q 293504
whatshap/core.cpython-37m-x86_64-linux-gnu.so sha256=JUd8w4w7OY2fNJf2PDwGwvC4E0W7ltDGJ4fwrRkHIuo 1004392
whatshap/pedigree.py sha256=SkAgU_TnmbfBli1Du2bC1lMlfz91xDaM_qCUqgSLZWw 11576
whatshap/align.pyi sha256=wO9-qdQU60biuVWtV5jIgF5YnR5hEqusPJBGS1GvcFk 462
whatshap/utils.py sha256=_mugPU5WYEAnQbPvS_GiLcfOInTjytJ3enIxgtQcgEo 4982
whatshap/readselect.pyx sha256=lIEvb9be61LJQH7Kn-YaO9hyrXzgNrtgd1jjhovW-W8 11276
whatshap/priorityqueue.pyi sha256=vy0N76Q14mBgs8whbBMzDfA476aJg8XX0nFHWRLBGOA 393
whatshap/core.pxd sha256=DWGoob_ej_mXqdb71pAFGmOCo0P2upbTRyvAQQ9_yZU 936
whatshap/align.pyx sha256=8GGZwrWeYADZQhnKuQP1LgAGzCZl1oFS460Bzz1Zmgs 6556
whatshap/cpp.pxd sha256=jW4JG3hl_XdmaZWAeg5EZ6uMqmZeUmWbf4ThQP509GM 11515
whatshap/vcf.py sha256=FaTTiLfr8R93a6zyli6WdjEWkUWm2RCqCKtU1x_nQco 53162
whatshap/_version.py sha256=Lr7PeFdO4l4TfHBm8XIDe5VK5lLe_GmTs7w6miyckrg 155
whatshap/verification.py sha256=7h54V3sFmYdQAXWfoCq2nzRmr31JNjzZlMhH0a-U1sI 2020
whatshap/args.py sha256=8bad2_xoLgv0bbe7f0Cy5A2r1RXoh2C73V0nsfa83Gg 564
whatshap/graph.py sha256=oz-OpdTZUUpWkawhivjP6X7vzwIXVl9lK0pilEqwqW4 3937
whatshap/phred_scores.py sha256=_Vrcg0R7whFUoRxrvwhdLSxeVEnfrcfC7dt2prhf-Cs 2703
whatshap/priorityqueue.pyx sha256=4_t4ov7gaH9-XMGoq8QHAi0NwFFGPsUu-touzqG8sHU 7100
whatshap/_variants.pyx sha256=NHLzr1XRSrWX4lQ3OouHquQfMRaoXgVeEfvjAZBxgy4 12514
whatshap/priorityqueue.pxd sha256=1oe9rx1CETrMvFqRPJesFYA3g9ADgMGefLVdLjNCgi0 901
whatshap/cli/polyphasegenetic.py sha256=ILVh-Kp9EZiu83GkRTW9gowVYcMOnsLEGxP5GoGJD1A 24339
whatshap/cli/polyphase.py sha256=82Z9FLIqIDl5uTVCULXv9PHuNo7lzyXCD2cQHa9FQ_Y 20741
whatshap/cli/compare.py sha256=Gwy7fbdJqBrsVL64hjfTxhWf9e3avJsiQSibTfX2PZU 40506
whatshap/cli/__init__.py sha256=ajEjZwsf0Y3skvHHmXCgTJuFQ2NY7TCjt7wW5u-Od_w 8267
whatshap/cli/split.py sha256=vNhs5VzdRkB5sJK-St87avKEcXAKb8RbfwDLlH1OLIw 17983
whatshap/cli/genotype.py sha256=UouYU22Ipqs6ZI5Ol4Vyra2G_QFjlaHbp_CzdEL4WRw 24319
whatshap/cli/haplotag.py sha256=bMHvJ9KzS08bSMu5V6PopwAglUS3tLO_TWpKxcf3td8 27054
whatshap/cli/haplotagphase.py sha256=ShKEWdLV8KepllHN9X_eBNY-qg_FV4LzWBPxGUfiQao 16458
whatshap/cli/unphase.py sha256=fUPVf2CDe637JYdAMH5HJ5mcJ9e7M9JkisxGZtwRBGw 1947
whatshap/cli/stats.py sha256=Z8SPp4xsfz3GvRwIQsthReD5T9wTCabSMKXgVYjgi00 21930
whatshap/cli/hapcut2vcf.py sha256=MDkqhZZw-uob5Z6kLrht29n1WUASCejZqs-A5bDPy1U 7912
whatshap/cli/phase.py sha256=4MqXJQOe9U_-eM8XdKE8GkiNKS0o5lKVqkQSy5WP57Y 52672
whatshap/cli/learn.py sha256=3BmMOG7FZoOtJo966JIeGhMSpfje5lMI0BnoEglOCKE 2175
whatshap/cli/find_snv_candidates.py sha256=xL4hWIVXQwj2qYrsW2yv19W5KO-VTeoToJNB_HkrryI 5599
whatshap/polyphase/solver.cpython-37m-x86_64-linux-gnu.so sha256=TsqCAJUxqau4yRIeUOLftNcwWCAVIP2nIWGqXKloxtc 575416
whatshap/polyphase/solver.pxd sha256=sy52p7YwJ0oebxLsJFdRbdwR-DXbqv1aG3vbEB9oZN4 638
whatshap/polyphase/clusterarrangement.py sha256=AglmXE_KUMOYtNnIaBAmg8FhuwRGJ8mUbcA0TnR1lsc 2557
whatshap/polyphase/__init__.py sha256=FfAp5W76gI0GNAPJqcjelr2UA9J8kE0O8wqLnMAQydA 7461
whatshap/polyphase/variantselection.py sha256=HDcHpuwA_2q0EJWw75gEFf51Kjfi0YVIHtqfWkedbSg 7081
whatshap/polyphase/solver.cpp sha256=ifEcAybfFgs_isoYIKYpdd7iCeuIijH8ry3s-RTJtHA 1182600
whatshap/polyphase/reorder.py sha256=4tHIrHMRITYQuYSnf2ttSMmYU0P-OZ6kJmlieZbzCzM 21006
whatshap/polyphase/threading.py sha256=7gCvIVFIY7g0GK7hnjHuUDCP-AqKW3NJ2AB_MsC1GFo 11095
whatshap/polyphase/offspringscoring.py sha256=OCsKaT9G47Kzn2UkzmtCOjt55zZgzFRZx2FjaG83Bq4 10145
whatshap/polyphase/algorithm.py sha256=7VkWeCqJ-STUxmnalaK0AadMPZJi2k4NtXBl7KansTY 13360
whatshap/polyphase/solver.pyi sha256=z-ka5OIw_IpHI5rButTlisGDnSj_Lqraqt4opTalNQE 1999
whatshap/polyphase/plots.py sha256=C2lqsK6CR3MoEW3afVWAUWbzAdCaxp7AMna8aKtwDt0 39161
whatshap/polyphase/solver.pyx sha256=hq-YjqqOptG4DUH0y6KZSKNlDYNPZP9xntGhH0L-8nw 9830

top_level.txt

whatshap

entry_points.txt

whatshap = whatshap.__main__:main