Reverse Dependencies of twobitreader

The following projects have a declared dependency on twobitreader:

• clumps-ptm — CLUMPS-PTM driver gene discovery using 3D protein structure (Getz Lab).
• explosig-data — Process mutation data into standard formats originally developed for the ExploSig family of tools
• genomedashboard — Genome Dashboard is the logic behind a web-based prototype of a genomics dashboard, specifically designed to integrate informatics and 4D material studies of chromatin. Genome Dashboard unites our Interactive Chromatin Modeling (ICM) tools with the Biodalliance genome browser and the JSMol molecular viewer to rapidly fold any DNA sequence into atomic or coarse-grained models of DNA, nucleosomes or chromatin.
• mutagene — Mutational analysis with Python
• nAltORFS — nAltORFs is a set of command-line tools for working with Nested Alternate Open Reading Frames.
• signatureanalyzer — Bayesian NMF methods for mutational signature analysis & transcriptomic profiling on GPUs (Getz Lab).