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totalspineseg

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20241122 totalspineseg-20241122-py3-none-any.whl

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Project: totalspineseg
Version: 20241122
Filename: totalspineseg-20241122-py3-none-any.whl
Download: [link]
Size: 77239
MD5: ad8d01a906a31e4c167025b9464550e2
SHA256: 2a00cec1fa76f1d5827a8a1b09f76b8ffbf3fe376359e4500d77b6ae73b7bcbb
Uploaded: 2024-11-22 20:06:00 +0000

dist-info

METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt

METADATA

Metadata-Version: 2.1
Name: totalspineseg
Version: 20241122
Summary: TotalSpineSeg is a tool for automatic instance segmentation and labeling of all vertebrae, intervertebral discs (IVDs), spinal cord, and spinal canal in MRI images.
Author: Anat Achiron, Julien Cohen-Adad
Author-Email: Yehuda Warszawer <yehuda.warszawer[at]sheba.health.gov.il>, Nathan Molinier <nathan.molinier[at]polymtl.ca>
Project-Url: homepage, https://github.com/neuropoly/totalspineseg
Project-Url: repository, https://github.com/neuropoly/totalspineseg
Project-Url: Dataset101_TotalSpineSeg_step1, https://github.com/neuropoly/totalspineseg/releases/download/r20241115/Dataset101_TotalSpineSeg_step1_r20241115.zip
Project-Url: Dataset102_TotalSpineSeg_step2, https://github.com/neuropoly/totalspineseg/releases/download/r20241115/Dataset102_TotalSpineSeg_step2_r20241115.zip
Keywords: deep learning,image segmentation,semantic segmentation,medical image analysis,medical image segmentation,nnU-Net,nnunet,mri,spine,ivd,intervertebral disc,spinal cord
Classifier: Development Status :: 5 - Production/Stable
Classifier: Intended Audience :: Science/Research
Classifier: Programming Language :: Python :: 3
Classifier: Topic :: Scientific/Engineering :: Artificial Intelligence
Classifier: Topic :: Scientific/Engineering :: Image Recognition
Classifier: Topic :: Scientific/Engineering :: Medical Science Apps.
Requires-Python: >=3.9
Requires-Dist: tqdm
Requires-Dist: numpy (<2)
Requires-Dist: nibabel
Requires-Dist: gryds
Requires-Dist: torchio
Requires-Dist: scipy
Requires-Dist: pillow
Requires-Dist: nilearn
Requires-Dist: SimpleITK
Requires-Dist: nnunetv2 (<=2.4.2)
Requires-Dist: psutil
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 14601 characters]

WHEEL

Wheel-Version: 1.0
Generator: setuptools (75.6.0)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
totalspineseg/__init__.py sha256=hzAFZ9qaODJV4xYaMlwUouRK1bMbj8yyXTg4TcxP7Fg 1062
totalspineseg/inference.py sha256=hBb1SgkiLfj-RaLjKLSeEda94B4Gw6xIR2I0yh_W6X0 34557
totalspineseg/init_inference.py sha256=NUonCBK6Yv7upGzEVoekGaA1Hg3V_UuguRwhPNA8wgY 3170
totalspineseg/models/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
totalspineseg/utils/augment.py sha256=EkuXqRYPSIsxBnvOmuJ93xzQZC8VoMa5QzRMfubG9B4 26422
totalspineseg/utils/average4d.py sha256=kmfgIpxZD-mR-m60Fftk1pg8ik2ZWO8o01H1DLobA80 6890
totalspineseg/utils/cpdir.py sha256=IT7FprbW5jrNmqmwzeOhfq_AYwk9Bo_r3uHfjAgvOBQ 6068
totalspineseg/utils/crop_image2seg.py sha256=WTeh_FiOyjSqgjFC2cUCc3OyivyNliERdIktofEx86Q 9347
totalspineseg/utils/extract_alternate.py sha256=yJLUGEtNgPCrK9lB05l_nG_8a1eYQAxtVPU9-7BkGDI 9087
totalspineseg/utils/extract_levels.py sha256=6agO8O2m0mPWgxYIhPGmcCNx3ExKTjOsJHMwA8zeSgU 13783
totalspineseg/utils/extract_soft.py sha256=YyCLhIp61sOtH4RX1mnsvRWn0Tq8hlEUa6sh3ZUgRlg 9934
totalspineseg/utils/fill_canal.py sha256=AuU9K-SDFtOrR5r1WcCvlS2AGdHic-_KJUdvsJFCatU 10091
totalspineseg/utils/install_weights.py sha256=aQ8eIo914S8rt2OK4E3bPWz14OJDAY_uE54N2eKCpA4 4885
totalspineseg/utils/iterative_label.py sha256=VuIMhdxqnuSKApj-laTfW5in8Npy2P3mC84yASsXaqY 53306
totalspineseg/utils/largest_component.py sha256=pBuQTNpQdVhLIt6v4SLkt7VDRk41Ox9MWi0myCXZeKE 7813
totalspineseg/utils/map_labels.py sha256=vDRhsMIhFSCS-1k99U7WMTPAA9_oGAIq_8k_hNRkR5Y 11519
totalspineseg/utils/predict_nnunet.py sha256=81QqXnCe5KrGpahtKm_2xD0zjrywX499Ns_SlVozf1E 9158
totalspineseg/utils/preview_jpg.py sha256=Aoy4x5fjqxS2zs0DAATDaum8AXJ-K3XB-cnBDpgu28M 18431
totalspineseg/utils/reorient_canonical.py sha256=iu9eNxrtN1A_HUWwAtudLQneT5fbyAsAXhUF9WTxnrQ 6443
totalspineseg/utils/resample.py sha256=2uAFWNnYSgMPY3iSGn9WXGSi1RJNbSeP10NJ9-9h6BY 7909
totalspineseg/utils/transform_seg2image.py sha256=RtM2Sb0kG4ZOemVpH5A816EkWHV5FEjTt8RcH4QFr9g 11230
totalspineseg/utils/utils.py sha256=7yooohtkPbCv9AG3EATXvmlLXQJVW2fyhvKUTH8EMps 187
totalspineseg-20241122.dist-info/LICENSE sha256=46mU2C5kSwOnkqkw9XQAJlhBL2JAf1_uCD8lVcXyMRg 7652
totalspineseg-20241122.dist-info/METADATA sha256=EZRSYF6F4U991p68x1SmSPQxmBV62-FBqGAzqTCBiVI 16417
totalspineseg-20241122.dist-info/WHEEL sha256=PZUExdf71Ui_so67QXpySuHtCi3-J3wvF4ORK6k_S8U 91
totalspineseg-20241122.dist-info/entry_points.txt sha256=zA9VXGo4e3DNyjDp0Ix9CvZbTLwBEowD3c5ZB0DrPhY 1279
totalspineseg-20241122.dist-info/top_level.txt sha256=gGpaNNR07ij87I-0kDNHZsCe7kuNbuDSKo1A_h5ZmR8 14
totalspineseg-20241122.dist-info/RECORD — —

top_level.txt

totalspineseg

entry_points.txt

[console_scripts]
totalspineseg = totalspineseg.inference:main
totalspineseg_augment = totalspineseg.utils.augment:main
totalspineseg_average4d = totalspineseg.utils.average4d:main
totalspineseg_cpdir = totalspineseg.utils.cpdir:main
totalspineseg_crop_image2seg = totalspineseg.utils.crop_image2seg:main
totalspineseg_extract_alternate = totalspineseg.utils.extract_alternate:main
totalspineseg_extract_levels = totalspineseg.utils.extract_levels:main
totalspineseg_extract_soft = totalspineseg.utils.extract_soft:main
totalspineseg_fill_canal = totalspineseg.utils.fill_canal:main
totalspineseg_init = totalspineseg.init_inference:main
totalspineseg_install_weights = totalspineseg.utils.install_weights:main
totalspineseg_iterative_label = totalspineseg.utils.iterative_label:main
totalspineseg_largest_component = totalspineseg.utils.largest_component:main
totalspineseg_map_labels = totalspineseg.utils.map_labels:main
totalspineseg_predict_nnunet = totalspineseg.utils.predict_nnunet:main
totalspineseg_preview_jpg = totalspineseg.utils.preview_jpg:main
totalspineseg_reorient_canonical = totalspineseg.utils.reorient_canonical:main
totalspineseg_resample = totalspineseg.utils.resample:main
totalspineseg_transform_seg2image = totalspineseg.utils.transform_seg2image:main