Path |
Digest |
Size |
tcrdist/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
tcrdist/adpt_funcs.py |
sha256=WmwZE5GzMYAt8E_fZC7ILjYzPbdJafwDAhELqkvQ4zw
|
24499 |
tcrdist/automate.py |
sha256=ND176Z4QQXdj_5zsNDGZXMK0ZC-SbFZwb9JFNOb1geg
|
5655 |
tcrdist/background.py |
sha256=Uy64VuWNMd_K3Mq2ABvmizBd94RuVSqIdoEwCUr-07s
|
21905 |
tcrdist/breadth.py |
sha256=uWZmyZ-ewhrTL9QNUP0YsG3o2mPCXkg0VEAS2rKSp0k
|
11050 |
tcrdist/centers.py |
sha256=sXs14ZrExOH2xYD0Wsa7451rO4mcY4ldIF_iJymr26c
|
21088 |
tcrdist/diversity.py |
sha256=zL3HxQYjWhTbQs3qM62yw7WG5X0KXs97B-g7C-XqUsM
|
9516 |
tcrdist/ecdf.py |
sha256=qZtFoaCHSspdFzK4Dy4CbJ1Lb8eNanT47Z972LHzIv0
|
9648 |
tcrdist/gene_pairing_plot.py |
sha256=wX0PIU38Aw0flRfLhWHfVpRJE7RXskxJPfJU4oo1eJo
|
21433 |
tcrdist/html_colors.py |
sha256=fyCvmqqgzwI60EB61fnxgzdJaJLEC4J3y6rZ3p36Zbw
|
9693 |
tcrdist/join.py |
sha256=cQel8nHXqZ6wb1xLPXXBRKJiWazz_hubvfKF99E3isw
|
5990 |
tcrdist/mappers.py |
sha256=2bzNhcFLYI6DVe8Gs-85vSiUIwtA6h_3FTnLkeRrOUc
|
39521 |
tcrdist/memory.py |
sha256=beX_opZza9zrKAw6rBzldJvGPuUnBUO_ig-iBEaJ83U
|
11909 |
tcrdist/neighbors.py |
sha256=JIsMqrQmEU1eQ44WeaX7tqxxH7iZ-zcETvKO8IyKrI8
|
37569 |
tcrdist/olga_directed.py |
sha256=DrwtyYsyzvEXrj7m_P7A-eRr4e-7EUu3exetIG1izZc
|
24763 |
tcrdist/olga_load_model.py |
sha256=ZDNpJBUvcxY8sBmKoFmuXJC7Ve4zkRQZW6QR_x3a_-o
|
39936 |
tcrdist/paths.py |
sha256=c-WJTV4l3kRdlmx7bROuZOV61S66_KIKDh0g3I2LOuE
|
307 |
tcrdist/pgen.py |
sha256=-IH0PpdRjR0cMCDK9hmfdfwcT8vO5KCH2amEfOTY-kU
|
14144 |
tcrdist/plotting.py |
sha256=d5vQQ7q6ldLJ9C1ZRcmppQkjl7-ilhsQjG7DI9T-7cU
|
796 |
tcrdist/public.py |
sha256=gUBJAPxmCEVeRXMS9BhH9Dj-ckPDNIRF10iVOXCTUpk
|
17983 |
tcrdist/regex.py |
sha256=WAzTTd11tOMmvYhq7t-Cvz-K4qaYZ2hi9yLrGFwfdxk
|
4096 |
tcrdist/rep_diff.py |
sha256=iofVw-yZlIqUWqQT-st0R6Xa6WwRpHdG2RxxXxFPg4E
|
10003 |
tcrdist/rep_funcs.py |
sha256=rjmSueXQYHztf6hcNTkSBg-aTUiXjEQJ6xHYgASI2HA
|
26978 |
tcrdist/repertoire.py |
sha256=ekO_6mnX93GpemH0QXBgPGDuOQwj1G8byJS0EBI96Bc
|
38721 |
tcrdist/repertoire_db.py |
sha256=k-GV2IhsUmFiJPUoBeu96KHqy3reYPZdn1t3-IWaE0U
|
6717 |
tcrdist/sample.py |
sha256=uKTmw1YG8FwyQZM68k5E6tQqjrQlijvvaN9w9vBijcU
|
7212 |
tcrdist/setup_tests.py |
sha256=b9x8Sm0NCAVc7VCnRfxQrWIV4eikM76C2rMyEt-hUxo
|
7903 |
tcrdist/sparse.py |
sha256=TrQet3sZsOB1UrZ1C4l_P-dtj3eBaQMGzkPxAJiH6CQ
|
1962 |
tcrdist/speed.py |
sha256=za8G_c66qeYc-HeqShr40GerU5Wchm9CQRbJ0UNjcp4
|
459 |
tcrdist/summarize.py |
sha256=Ap1rl41iUL-T_ttXi8g0rpSJOxzRp7iSIJZvB51QwlA
|
10611 |
tcrdist/swap_gene_name.py |
sha256=HUIGiLcoNgBPo6NjkGe2oLnI-fbFA8Atihg4t8IvV-w
|
951 |
tcrdist/tabulate.py |
sha256=eMZTp7j7PU4ae6zeSFKQp_bm8GT7TulMl93wTPKo2RA
|
5181 |
tcrdist/translation.py |
sha256=aX3wSYezkmwmQC9Tc7AArs1KL7CO6-jLDCnfSPDjxF0
|
8918 |
tcrdist/tree.py |
sha256=rgD7fpdNhj6W6rXORPRneD2S9EJf_TDa__tIoKgXYP8
|
40255 |
tcrdist/vdjtools_funcs.py |
sha256=YTSPjMJcdBjNb0HkFtOiijwIyn-kPEOe_IuUBtgRzr0
|
3744 |
tcrdist/data/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
tcrdist/data/covid19/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
tcrdist/data/covid19/m60_bkgd_test_input.csv |
sha256=d1FmUEPUSmT1XTDUr2narATHLue8VFnfjxBcRUxNGHs
|
3742030 |
tcrdist/data/covid19/m60_test_input.csv |
sha256=S4Y2c66DwI2pQeZwZpjcDbmQcpxqAXyhGYIVkJiWSAg
|
29105 |
tcrdist/data/covid19/mira_epitope_10_2274_LSPRWYFYY_SPRWYFYYL.tcrdist3.csv |
sha256=gpwBJqn6YYUowV4WBfxj0shaM5J3c8uN2CU4RtPxt8w
|
1055319 |
tcrdist/data/covid19/mira_epitope_110_148_ELIRQGTDY_QELIRQGTDY_QELIRQGTDYKHW.tcrdist3.csv |
sha256=KdarS0p8gqAkOslJo7LSgghrH9DCwL-Idq2K04_ccSg
|
67485 |
tcrdist/data/covid19/mira_epitope_111_146_AEIPKEEVKPF_ASKIITLKK_SASKIITLK.tcrdist3.csv |
sha256=E3ah_f1sDSVhSfYmYdVn_lu-rkvOpTDhrjHCgUHN0tw
|
63021 |
tcrdist/data/covid19/mira_epitope_118_136_ALNTPKDHI_ATEGALNTPK.tcrdist3.csv |
sha256=STIXd2a6tT4zqX1q-HcRwVkfGoEJBOkvDg_9eePtanw
|
58835 |
tcrdist/data/covid19/mira_epitope_133_102_NQKLIANQF.tcrdist3.csv |
sha256=5g76eBjOp5t5k2uSs3xNOXGfD12Qp7y5kXXsQFKM-VI
|
40740 |
tcrdist/data/covid19/mira_epitope_140_92_NSSPDDQIGY_NTNSSPDDQIGYY_SSPDDQIGY_SSPDDQIGYY.tcrdist3.csv |
sha256=m-_uAe4iLLFwZXJ62ud4yLmozcVkbX9JZ8UOmfpJBf4
|
45078 |
tcrdist/data/covid19/mira_epitope_147_73_DLFMRIFTI_MDLFMRIFTI.tcrdist3.csv |
sha256=vpUzPbgKR1g7S9clnWDyL0ZcXHobw-kuPwQ4z_ugCTE
|
30586 |
tcrdist/data/covid19/mira_epitope_155_59_RARSVSPKL_SVSPKLFIR.tcrdist3.csv |
sha256=_RnT2QurU9-GL_k-q9Je6v8g_IrLs53n14MumQ61gO0
|
24240 |
tcrdist/data/covid19/mira_epitope_16_1683_QYIKWPWYI_YEQYIKWPW_YEQYIKWPWY.tcrdist3.csv |
sha256=W0YB8Gc8rp-2lo6xeG0VEDSc-rwtVPIfh_9ruzXHwjY
|
769242 |
tcrdist/data/covid19/mira_epitope_176_44_SSTFNVPMEKLK.tcrdist3.csv |
sha256=owE1Mk-GQj9AWeCuFmU01GzV2ECvJsFojcXvvWI4ZEE
|
16731 |
tcrdist/data/covid19/mira_epitope_183_39_RIRGGDGKM_RIRGGDGKMK.tcrdist3.csv |
sha256=QWZ8IDbBP6IUIIjgrwzRlfvQYQvPidSWXKZ1UyChXAE
|
14939 |
tcrdist/data/covid19/mira_epitope_185_39_ASQRVAGDSGFAAY_DSGFAAYSR_VAGDSGFAAY.tcrdist3.csv |
sha256=HKOvwpYd8Vf3FEzi3JNqx06UP1DHthhujSGhq5kEM4Y
|
17462 |
tcrdist/data/covid19/mira_epitope_18_1578_FPNITNLCPF_QPTESIVRF_RFPNITNLCPF_TESIVRFPNI_VQPTESIVRF_VRFPNITNL.tcrdist3.csv |
sha256=Vu3mGVzsbyCZ56wgrl9Z0DmEioFwyQraVYIAoadQebU
|
770087 |
tcrdist/data/covid19/mira_epitope_192_31_FQPTNGVGY.tcrdist3.csv |
sha256=EM9OabAihF2bpI9FUkLrltQILAV5hMbTwmMGBONhSTw
|
12579 |
tcrdist/data/covid19/mira_epitope_1_8260_HTTDPSFLGRY.tcrdist3.csv |
sha256=HNARp4XTZyGfHlyjN17CK8FUb4eJ-Ac8n33Gbec0SIA
|
3439652 |
tcrdist/data/covid19/mira_epitope_29_1097_TVLSFCAFA_VLSFCAFAV.tcrdist3.csv |
sha256=6_1A7lcYKsFKIBoRkF1sgKk_YKD3iilVJR-OdzevCVQ
|
472186 |
tcrdist/data/covid19/mira_epitope_30_1064_KAYNVTQAF.tcrdist3.csv |
sha256=LNOSTqxUEaM0IRIb1iimO31t2OKGiCOWH1d-55upJx4
|
463809 |
tcrdist/data/covid19/mira_epitope_37_818_FGEVFNATRF_FNATRFASVY_GEVFNATRF_NATRFASVY.tcrdist3.csv |
sha256=ED4IA7XBVkOp-1rE8FT8Gz27gOk3v53DYPqJHZyj0RM
|
381905 |
tcrdist/data/covid19/mira_epitope_44_697_FPPTSFGPL.tcrdist3.csv |
sha256=3JuZVmKYjCxRzDvh5ZVGzgNxKLEuSJ-ALQOD_XLF7V4
|
289210 |
tcrdist/data/covid19/mira_epitope_45_689_SYFTSDYYQL_VLHSYFTSDY_YFTSDYYQLY.tcrdist3.csv |
sha256=RH4ztkQbVfUUUTHNtz-zWkcWTcwoJzjfgUC_U0lSjJQ
|
304689 |
tcrdist/data/covid19/mira_epitope_48_610_YLQPRTFL_YLQPRTFLL_YYVGYLQPRTF.tcrdist3.csv |
sha256=_cJstr9Wr5ZMdHMZ9v4gxLIL3rwUf4LNCLWwwyxAzr0
|
266087 |
tcrdist/data/covid19/mira_epitope_51_546_AYKTFPPTEPK_KTFPPTEPK.tcrdist3.csv |
sha256=uXTAEK1uVaKB47YWk5dT_-h9M97dDjEu9kPp7qTr15Y
|
235038 |
tcrdist/data/covid19/mira_epitope_53_532_NYLYRLFRK_NYNYLYRLF.tcrdist3.csv |
sha256=Jheq4DIcXTBlnRdtojav4ecZJkMpB4ACK-T1ZA8aPKw
|
239096 |
tcrdist/data/covid19/mira_epitope_55_524_ALRKVPTDNYITTY_KVPTDNYITTY.tcrdist3.csv |
sha256=p-Atw0WQgvHSaRQiln7viGA6fj4v6CfJI79Rmn6yqVA
|
228008 |
tcrdist/data/covid19/mira_epitope_55_524_ALRKVPTDNYITTY_KVPTDNYITTY.tcrdist3.csv.bE5ctrl.centers.csv |
sha256=5v7ctGM_lunyaeeFbFjvLDYm9DRFWdP9fWkslu22Pr8
|
420661 |
tcrdist/data/covid19/mira_epitope_55_524_ALRKVPTDNYITTY_KVPTDNYITTY.tcrdist3.csv.bE5ctrl.centers.csv.ranked_centers.tsv |
sha256=zFCNH0gXKVdKauaJnjPW-rThA5oYAKEPzTqBCTksxzo
|
83622 |
tcrdist/data/covid19/mira_epitope_55_524_ALRKVPTDNYITTY_KVPTDNYITTY.tcrdist3.radius.csv |
sha256=2uG0ZBleNpcYPwS7evsyHT9VTaZdIUxFHyVvtsBFTNI
|
57848 |
tcrdist/data/covid19/mira_epitope_67_382_APHGVVFL_APHGVVFLHV_GVVFLHVTY_VVFLHVTYV.tcrdist3.csv |
sha256=9GLp1QWOIqbqqP8fN4-zUf_Vg4XvngIRp-3NPZbIKEI
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179149 |
tcrdist/data/covid19/mira_epitope_70_345_DTDFVNEFYAY_NRDVDTDFVNEFY.tcrdist3.csv |
sha256=37A3784k-pzwXjUXXeHDyDn84plz48AbydHkqhkZAdQ
|
147149 |
tcrdist/data/covid19/mira_epitope_90_216_GYQPYRVVVL_PYRVVVLSF_QPYRVVVL_QPYRVVVLSF.tcrdist3.csv |
sha256=oQm3imc-LWAO8eCiIrCGviZWKbU2WhhkLGZ2cl1qaiI
|
98533 |
tcrdist/data/covid19/mira_epitope_99_191_QECVRGTTVL.tcrdist3.csv |
sha256=O-ysnwwDQyhJyqShPva7soxd6q3F892dOt8dsj1Ho7c
|
80372 |
tcrdist/data/covid19/mira_epitope_9_2477_FLQSINFVR_FLQSINFVRI_FLYLYALVYF_GLEAPFLYLY_INFVRIIMR_LQSINFVRI_LQSINFVRII_QSINFVRII_SINFVRIIMR_VYFLQSINF_VYFLQSINFV_YFLQSINFVR_YLYALVYFL.tcrdist3.csv |
sha256=3jkardCopTmzXspdroH0FRShJdk1U0AsB7GnFZqr08c
|
1343541 |
tcrdist/db/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
tcrdist/db/adaptive_imgt_mapping.csv |
sha256=wQzjtVnZhebwO-_kTmPVWCXzSaSGOpLXZjWjsHfhbXc
|
17861 |
tcrdist/db/alphabeta_gammadelta_db.tsv |
sha256=mzsy6Rzrb6fYGV1MsFYzMDqgRBPN3yP8lF_xWBI1v3k
|
487823 |
tcrdist/db/combo_db.tsv |
sha256=HPnZCV_qD334gkTFgPgiC4oN4asQwfZPVa8Dh7fV4mc
|
489638 |
tcrdist/db/combo_xcr_2023-12-30.tsv |
sha256=r5cLYfzrDorNmLyOKxwKeUVIHnlANwBiFbAip719Fbw
|
1227792 |
tcrdist/db/combo_xcr_2024-03-05.tsv |
sha256=HX_Kw3rW2VWzo_aTUm42YjGGRkrvLFKM-OAyLciXBs0
|
1234156 |
tcrdist/default_models/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
tcrdist/default_models/human_B_heavy/J_gene_CDR3_anchors.csv |
sha256=RgAtjw_4xdedwLyG7HH-4B4EliupYBK0aWjCvJCptsA
|
255 |
tcrdist/default_models/human_B_heavy/V_gene_CDR3_anchors.csv |
sha256=aEVGcvbtEPHMKtc1Vs6JdqDPqcNyAwz64-XGgCx5hho
|
5839 |
tcrdist/default_models/human_B_heavy/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
tcrdist/default_models/human_B_heavy/model_marginals.txt |
sha256=Ws7vkSmcB7mVEb0u1sQ41ryh0atLbPDUsPOgqppp4vY
|
483313 |
tcrdist/default_models/human_B_heavy/model_params.txt |
sha256=odgOsQgyaSRw3E9rv1W4iuRBSpaXa804SjV38xhVIwY
|
35291 |
tcrdist/default_models/human_T_alpha/J_gene_CDR3_anchors.csv |
sha256=WmXo0SPSrPFx2-6HnovOJ7cyw27LWE2IDVRjld2udj8
|
1114 |
tcrdist/default_models/human_T_alpha/V_gene_CDR3_anchors.csv |
sha256=QfV86zV6nIq7Bm583xbjSx4OjwZK6fKBPBWpdeJ7OIg
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1901 |
tcrdist/default_models/human_T_alpha/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
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0 |
tcrdist/default_models/human_T_alpha/model_marginals.txt |
sha256=vvjn8b4dFfVA_YnDBmzNYv9iqSJrCplG5LmjZGXxwzY
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75679 |
tcrdist/default_models/human_T_alpha/model_params.txt |
sha256=uMIgOzocXajTcXwnB2Y25PNtc5H_B8M666ppeUEjhVU
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35883 |
tcrdist/default_models/human_T_beta/J_gene_CDR3_anchors.csv |
sha256=OOBvuVO-XYXYzV8LT2d04GVPpJjYEYR2f5nZKHcYzkk
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283 |
tcrdist/default_models/human_T_beta/V_gene_CDR3_anchors.csv |
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2570 |
tcrdist/default_models/human_T_beta/__init__.py |
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tcrdist/default_models/human_T_beta/model_marginals.txt |
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27384 |
tcrdist/default_models/human_T_beta/model_params.txt |
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30009 |
tcrdist/default_models/mouse_T_alpha/J_gene_CDR3_anchors.csv |
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785 |
tcrdist/default_models/mouse_T_alpha/V_gene_CDR3_anchors.csv |
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tcrdist/default_models/mouse_T_alpha/__init__.py |
sha256=AbpHGcgLb-kRsJGnwFEktk7uzpZOCcBY74-YBdrKVGs
|
1 |
tcrdist/default_models/mouse_T_alpha/model_marginals.txt |
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81928 |
tcrdist/default_models/mouse_T_alpha/model_params.txt |
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36713 |
tcrdist/default_models/mouse_T_beta/J_gene_CDR3_anchors.csv |
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257 |
tcrdist/default_models/mouse_T_beta/V_gene_CDR3_anchors.csv |
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448 |
tcrdist/default_models/mouse_T_beta/__init__.py |
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|
0 |
tcrdist/default_models/mouse_T_beta/model_marginals.txt |
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12795 |
tcrdist/default_models/mouse_T_beta/model_params.txt |
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13475 |
tcrdist/tests/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
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0 |
tcrdist/tests/longtest_pgen_parallel.py |
sha256=pGVZr3jik0qRI8nJ7S1bX341vGFxcgYM5V9JwYHRgPM
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1763 |
tcrdist/tests/longtest_simulate_cdr3_w_olga.py |
sha256=fPLtO2jLkR7BsZzMSZuTxIKicxSXo2OsNBm-v5q301M
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5424 |
tcrdist/tests/test_automatic.py |
sha256=lEfiscu4OonJzBLS0oE6BfWommAnoQ3GIRQHeTx1bfI
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3809 |
tcrdist/tests/test_background.py |
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6087 |
tcrdist/tests/test_breadth.py |
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21723 |
tcrdist/tests/test_bulkdata.py |
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5814 |
tcrdist/tests/test_centers.py |
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9344 |
tcrdist/tests/test_diversity.py |
sha256=iaWOWxpxeuEq6Mlc69tZ2iSrpJUITa1VfXg87QBJXQM
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2664 |
tcrdist/tests/test_downloads.py |
sha256=9iKInMfjKSUD9RyqrXjq31DL_Xsw5zxlJKcuWNboRRs
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1122 |
tcrdist/tests/test_ecdf_example.py |
sha256=IKOlqDdpD8KSwfIDD9gTEwG9UD_mYE2t4RaZ221Ifa0
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