Wheelodex » Projects » tb-variant-filter

tb-variant-filter

View on PyPI — Reverse Dependencies (0)

0.4.0 tb_variant_filter-0.4.0-py3-none-any.whl

Wheel Details

Project: tb-variant-filter
Version: 0.4.0
Filename: tb_variant_filter-0.4.0-py3-none-any.whl
Download: [link]
Size: 75401
MD5: 8827d4e0de2c1c23baf50c661c670d11
SHA256: 8f4ce1810b79ae89ddd23bdaab4a1e53062b6fd71d8f49b62b8a660b85ff6fca
Uploaded: 2023-08-10 13:48:44 +0000

dist-info

METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt

METADATA

Metadata-Version: 2.1
Name: tb-variant-filter
Version: 0.4.0
Summary: This tool offers multiple options for filtering variants (in VCF files, relative to M. tuberculosis H37Rv).
Author: "Peter van Heusden"
Author-Email: pvh[at]sanbi.ac.za
Home-Page: https://github.com/COMBAT-TB/tb_variant_filter
License: GPLv3
Keywords: bioinformatics,tuberculosis
Classifier: Development Status :: 4 - Beta
Classifier: Environment :: Console
Classifier: License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Programming Language :: Python :: 3
Classifier: Operating System :: POSIX :: Linux
Requires-Python: >=3.7
Requires-Dist: intervaltree
Requires-Dist: lxml
Requires-Dist: pandas
Requires-Dist: vcfpy
Requires-Dist: requests
Requires-Dist: neo4j
Requires-Dist: pytest (>=6); extra == "test"
Provides-Extra: test
Description-Content-Type: text/markdown
License-File: COPYING
[Description omitted; length: 5489 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.41.1)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
tb_variant_filter/__init__.py sha256=tNf7sXCxN112O3_pgOjyEg_oL5cqC_w7xydzsXupn3E 2613
tb_variant_filter/bed_to_regions_cli.py sha256=bLVE-YGoEeWzvmoJJ-s8Wx12zUcvclqEk1Nt1dK0FpI 762
tb_variant_filter/cli.py sha256=28fH-hQBdH1VkYjqoOY7whTpwW43FeaVJ10-20UKigM 2407
tb_variant_filter/region_list.py sha256=gk6Gm9giNGbjmQNUIbwn4eEpb_clF4zujI8PyK_MvlM 5668
tb_variant_filter/regions_to_bed.py sha256=QQxwM0GCeLWrjs3zPl3X3lRZI5_eyvcA8V1cZ0yEnVU 1391
tb_variant_filter/filters/__init__.py sha256=00FJFr3_u2TzzVQzJHJfJab_vCzzXM-LYeqUgzjiaQE 3167
tb_variant_filter/filters/alt_percentage_filter.py sha256=qK7lumEXw3YOrGWvQBQP2Rt4CzzLMnp_AwpOEv3R_T4 5859
tb_variant_filter/filters/close_to_indel_filter.py sha256=2QhldO3EyBtCg-ahPS-_GwE9d1PKU13lbSAoJbesRfk 3271
tb_variant_filter/filters/min_depth_filter.py sha256=n2-BJ__-rGmNLc7xIQ3xBclUZqKMmJ1kSX7uQWIiD0o 2177
tb_variant_filter/filters/region_filter.py sha256=FS4T6Snn-zntPC6Eph2kBZckfmppn2AczDna7NXwPK4 3882
tb_variant_filter/filters/snv_only_filter.py sha256=d_qT_VFsqn639yi6WRcP5VloGfKvxVVL4E4rbtCAb9I 1753
tb_variant_filter/masks/__init__.py sha256=kpDju8x0-VDRiJaywWr8m1Y2bDp6JuSXxmXybDDVayw 1106
tb_variant_filter/masks/farhat_rlc.py sha256=Jnr3OJZt1Txfdo-uaTPsghTqt9sHTNa3G_SPrBScHrA 59080
tb_variant_filter/masks/farhat_rlc_lowmap.py sha256=GTmYbblTqb381bs8EIu52eVwrWyk-sNgXJTP3e_U9Lw 100507
tb_variant_filter/masks/mtbseq.py sha256=XgD7gxFmMAomQ4Fpwj46a_xRUptQdiTaT_CSxCUiXe0 4230
tb_variant_filter/masks/pe_ppe.py sha256=MuLUbJ-f7uPXIMhoExBWmZFhnzCS-vO_8z71xhdE2fk 13795
tb_variant_filter/masks/tbprofiler.py sha256=DWHue30hRbSbq9SDjc3DrZuvL6RE7QFz8uNQhoOMxSk 6005
tb_variant_filter/masks/uvp.py sha256=yS-8C3m6xJl3oiaTJucWXLsruYrkvjExHLIsCf4dyLY 18152
tests/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
tests/test_alt_percentage_filter.py sha256=jb2NRzixhUIGikBsE63jR6NvBZjN-ML94cD2rfAakk8 1794
tests/test_close_to_indel_filter.py sha256=f9I7KfIW0NovmwxipToTXz62QgjGPEwyIiJFUlKTmJY 938
tests/test_farhat_rlc.py sha256=5QGhVjBjv0FlI9yfoLHLCP9klSZtHe7DnGzpuIciqYs 545
tests/test_farhat_rlc_lowmap.py sha256=aeA088s1rHszA4MtqWfElR7XE2ogIeSkz3B_7RvIIx4 652
tests/test_min_depth_filter.py sha256=NWtaGhLxscrbN_OrSkz19D6X_w8clHlFjmCuGVIdXpY 935
tests/test_mtbseq.py sha256=HttvHUb7S94y_sj0rL2QYJwlLLHpyc2uqn4mBITnsxE 658
tests/test_multiple_ann_records.py sha256=jb2NRzixhUIGikBsE63jR6NvBZjN-ML94cD2rfAakk8 1794
tests/test_pe_ppe.py sha256=fYijLoo4b8XQx-8rNN2QmhvkHlSOXBzB-7zxMoShkys 676
tests/test_region_filter.py sha256=fJCv27GYFWd-uElbIkDyvWMZ8OqGcKiKgdLTNDuf4PY 1701
tests/test_region_list.py sha256=ZIlzkwyuVkL1VY14TLwUAiq6KoJbGFc7AXbfuFzvvKU 358
tests/test_snv_filter.py sha256=McryNjdgS7XjlHuMelkUza60gip1FHZ6hu5jsNauWQY 892
tests/test_tbprofiler.py sha256=sIHPwB4gcn5Op-GtNHLBww0XCnwdlTxzT0PVP3spLuo 649
tests/test_uvp.py sha256=dCzttrsmg-A7TH2jiXt_-nqlQQpiT_DZeZ3Bs9kkLmQ 803
tests/utils.py sha256=4MmF6ZCwpZXEIaUc43pemb3gigRwGBVapDvT-sNXkRM 301
tb_variant_filter-0.4.0.dist-info/COPYING sha256=proz4x91SZR421UPJagjkyhDHtFpfHvGE_JrhKY2bz8 34667
tb_variant_filter-0.4.0.dist-info/METADATA sha256=o7PNHtubwFwIlYFqZYMzzAqHTDcHSHkdwmhXd0I8Nnk 6540
tb_variant_filter-0.4.0.dist-info/WHEEL sha256=5sUXSg9e4bi7lTLOHcm6QEYwO5TIF1TNbTSVFVjcJcc 92
tb_variant_filter-0.4.0.dist-info/entry_points.txt sha256=CeTQocBaureC8Fs_c-ZsW2sWqaX7i4HXbbjzq4kXOXU 193
tb_variant_filter-0.4.0.dist-info/top_level.txt sha256=miSNzLnSYV-28h4V9_sW4sNCOlJHl-oDrxxPN3kLwTY 24
tb_variant_filter-0.4.0.dist-info/RECORD — —

top_level.txt

tb_variant_filter
tests

entry_points.txt

[console_scripts]
tb_bed_to_region_list = tb_variant_filter.bed_to_regions_cli:main
tb_region_list_to_bed = tb_variant_filter.regions_to_bed:main
tb_variant_filter = tb_variant_filter.cli:main