Reverse Dependencies of SummarizedExperiment
The following projects have a declared dependency on SummarizedExperiment:
- BiocPy — Interface to all [BiocPy](https://github.com/BiocPy) packages
- cellarr — TileDB-based array storage for genomics data collections.
- celldex — Index of Reference Cell Type Datasets
- dolomite-se — Save and load summarized experiments in the dolomite framework!
- MultiAssayExperiment — Container class for representing and managing multi-omics genomic experiments
- pytximport — A python implementation of `tximport` to transform transcript into gene counts
- rds2py — Parse and construct Python representations for datasets stored in RDS files
- scranpy — Analyze multi-modal single-cell data!
- scrnaseq — Collection of Public Single-Cell RNA-Seq Datasets
- SingleCellExperiment — Container class for single-cell experiments
- singler — Python bindings to the singleR algorithm to annotate cell types from known references.
- SpatialExperiment — Container class for storing data from spatial-omics experiments
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