strkit

View on PyPIReverse Dependencies (0)

0.21.0 strkit-0.21.0-py3-none-any.whl

Wheel Details

Project: strkit
Version: 0.21.0
Filename: strkit-0.21.0-py3-none-any.whl
Download: [link]
Size: 350295
MD5: f46c0363396778002a7fc56438aa4e97
SHA256: b0fbe197b68ece1b4d84d61ab719fc4e01923696bf27cdd08a99f2a2219d1967
Uploaded: 2025-02-05 20:24:09 +0000

dist-info

METADATA

Metadata-Version: 2.2
Name: strkit
Version: 0.21.0
Summary: A toolkit for analyzing variation in short(ish) tandem repeats.
Author: David Lougheed
Author-Email: david.lougheed[at]gmail.com
Home-Page: https://github.com/davidlougheed/strkit
License: GPLv3
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.12
Classifier: Programming Language :: Python :: 3 :: Only
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Classifier: Operating System :: POSIX
Requires-Python: ~=3.10
Requires-Dist: Flask (<3.1,>=2.2.5)
Requires-Dist: orjson (<4,>=3.9.15)
Requires-Dist: pysam (<0.24,>=0.19)
Requires-Dist: numpy (<1.27,>=1.23.4)
Requires-Dist: parasail (<1.4,>=1.2.4)
Requires-Dist: scikit-learn (<1.6,>=1.2.1)
Requires-Dist: scipy (<1.16,>=1.10)
Requires-Dist: statsmodels (<0.15,>=0.14.0)
Requires-Dist: strkit_rust_ext (==0.20.0)
Description-Content-Type: text/markdown
Dynamic: author
Dynamic: author-email
Dynamic: classifier
Dynamic: description
Dynamic: description-content-type
Dynamic: home-page
Dynamic: license
Dynamic: requires-dist
Dynamic: requires-python
Dynamic: summary
License-File: LICENSE
[Description omitted; length: 11386 characters]

WHEEL

Wheel-Version: 1.0
Generator: setuptools (75.8.0)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
strkit/VERSION sha256=NjxqrLtomi72kbaWdGKfZH8a-v68ncNTqG5rCTALJPY 7
strkit/__init__.py sha256=AiSG5YSuTU3JAqdMmcm95msCkpNk7B3nA1peZ3H8wns 153
strkit/constants.py sha256=n_DnGqiemUzb6UYo9MVbIdbOAQsuhxpOt07Yb-FZLAs 1315
strkit/entry.py sha256=2s7cupwBHfDrP9j-ijlerr8d5XcfYiXIKAIkjj2t5Gc 24657
strkit/exceptions.py sha256=_tYgBvCfh92n90l36g_r243nQLHNdKeBtkqv57ya7mw 130
strkit/json.py sha256=p1lnghOA6iGGgpt2av2Trd1nLLqLTD6yXuF8tOklAAg 433
strkit/logger.py sha256=2IPKDdVYR8PU622IVAsfN2Vn3MCXrGcnlRjFbGyNMrI 865
strkit/utils.py sha256=svBXFyX8_ipoPcj_Wsq0sfV6la7NprVBn0XYlqzQcyo 1663
strkit/call/__init__.py sha256=RJNZCjKiaBWXYTe7rGhLLvdKPRsWnriXCbgTtapOmtM 209
strkit/call/align_matrix.py sha256=1b0_xTndNqIsirVRZ9G2cVXf9xq50QNp3RwD8Trh_no 1437
strkit/call/allele.py sha256=iuNJdEPSqXiEt0_dtEajC_aIibANfITvK6umW3kSRaM 14279
strkit/call/call_locus.py sha256=yh0Ilq57wfoaKtC10-lSNJ1jBcqBC4t_TSJSprR4GO4 67383
strkit/call/call_sample.py sha256=_KFAqlGGZl3-V8yvwrPZzbEjZgNrqiXmGZXeKcoWopU 18659
strkit/call/cigar.py sha256=Wj-8Wdu8xZXznidmwOoYZ-DB4169yttl8lwnm2xRzmA 355
strkit/call/non_daemonic_pool.py sha256=OJjl5mdzvpVAXmQf9oiWPmf2fr9sJ9e1rdD9V_UPjeU 620
strkit/call/params.py sha256=EygqsEjXlRLQwSWBAHD8OVoEd0ylhycqI0xxfDcWE90 5964
strkit/call/realign.py sha256=n0APfM8ugdz15uo4GEhUovavpB67UhZAm58inf_GaZs 4647
strkit/call/repeats.py sha256=b_LWMb8KEfsmddUKHunfee_DoK8O-VVqag0lQF_54Wo 7884
strkit/call/snvs.py sha256=j3syBTrn-bnXsLUB_h85xvBDlkHqdiZ-89YteumQ4K8 6524
strkit/call/types.py sha256=Z-ezid_uHX1d40qLBDgdXIQCi9-2xdiZZplo_gOXji8 3616
strkit/call/utils.py sha256=ZwsYS8QOXi3_Yjgn6CIA9glTXeggG3s-I7loIuGqoyk 1505
strkit/call/output/__init__.py sha256=h0oI8bl5-ict3Mu79uu8rX2i5CbczMwjELL4I5CnIy4 381
strkit/call/output/json_report.py sha256=2BseOQ9QDKmQHd6h9FasQBVrjzPgpWM0K9smd7Vr6c0 2605
strkit/call/output/tsv.py sha256=LDlM1kGptR-fOrc-lvhmKzkdlL7iCrHtspLvMYU2LII 1489
strkit/call/output/vcf.py sha256=woMBeBLqTb7-Cd-wa1QWlB60_-dYs1W_imgbVrXExnA 11974
strkit/catalog/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
strkit/catalog/combine.py sha256=kKPutXl4iOa2a1JCLhFtQqBkbCs5QkGsNpbPLFRYSCo 969
strkit/convert/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
strkit/convert/_bed_4.py sha256=ORU_OvgdrrTcwSPHQpWyIwRCtpUWcgh696pLbk3zanY 183
strkit/convert/converter.py sha256=38-srL1LkDC4A-VVay7hlnCmZKA3Fu2TvKMUoYi0dRo 1110
strkit/convert/expansionhunter.py sha256=vtLZEfvTghs8wmP2JXo1l3RM5FyKnm-3S3ANi8ZHh9E 462
strkit/convert/gangstr.py sha256=_uv1c8oHgoGsUB2x51zJ0OAtDx3Pq_aPqVsGbyonWYs 223
strkit/convert/hipstr.py sha256=vy3nxHmXQG7oWcM2fPSugMiekavlNphe0NlxmFXvuuE 239
strkit/convert/straglr.py sha256=t8X_qje1hwicrwff1oH3rW5LUDCEX679DgEzwT523d4 135
strkit/convert/tandem_genotypes.py sha256=QU4b8yzaWG74W37RoOldTFECSjAO6QA9cXyA1IXcV-w 153
strkit/mi/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
strkit/mi/base.py sha256=qHmfYaDUmyRv0B5jYqV5MzoolXxIfIVE7egx5dGLiGM 9083
strkit/mi/expansionhunter.py sha256=V0ZN07iFwO9LZFnR63SwpO5ZHEGbpZffYrStwqnJi_0 3445
strkit/mi/gangstr.py sha256=1WQs3bfjsnErOgUqrdISs2qm840cmlX6jj147LxzfSM 3070
strkit/mi/generic_vcf.py sha256=s9g8meABlYNOXVWR-uFyibNaBhV1zPTmpmlo2YMDVMs 3681
strkit/mi/intervals.py sha256=nLoFg9moEdFIOtJwrRZCMRVmgnasCA0DIA24cK2QnwM 3465
strkit/mi/repeathmm.py sha256=N1FZjh2oL8ChIz_ddz4MMN6IDQTlgkN48mjb-nUIpZI 3013
strkit/mi/result.py sha256=-xgubmucZjXuTX2WGo66Hcf29G3gSrQNQR-vqybbYfw 35463
strkit/mi/straglr.py sha256=2FnWhl4ZShwIPczbPYiRp48wYI5C1Nf7MdIzEdkNROI 3368
strkit/mi/strkit.py sha256=sMdDHic61YTu8ik2CMA22busVGjNtKRoeAHFsipbaYU 13408
strkit/mi/tandem_genotypes.py sha256=54DzPn1fwCCGQtkgcXFni17ORhxFwoZu0bxja5aT2NM 2518
strkit/mi/trgt.py sha256=Ofus54cpJDIG9V-gWsQjM4oCTo_Qvf9yZsdNOowaUZE 4478
strkit/mi/vcf_utils.py sha256=k3odwYs0dp9tzPuy7Ajokpdtlz_f6m1XGgYS-yJaOKg 575
strkit/viz/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
strkit/viz/server.py sha256=TafdUiZmbwbJ8vbTYLnNfls6_AdeAAGqdsKqx0qxn7o 2119
strkit/viz/static/logo.png sha256=oY03DcO4KRuXwtjxkzl--RS-fA2xevt1S7o6xwOft28 241282
strkit/viz/templates/browser.html sha256=RGOiQCOKvHvXKaYM164O9upc8YimhlwV_tnnklFEGZo 35001
tests/test_caller_utils.py sha256=e0dlpe63KF63q6juSUHALSK4-3U9UR23vqlK82ba4K8 802
tests/test_mi_intervals.py sha256=Vqo_6LqhMkNVFdEIZDPhtsS4vB7uI0fcYpaH2ElPyx4 1080
strkit-0.21.0.dist-info/LICENSE sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY 35149
strkit-0.21.0.dist-info/METADATA sha256=RsWOyjU9utlYXyn_aDJDJuhMboNepi_UMQXNqoCd9yI 12586
strkit-0.21.0.dist-info/WHEEL sha256=In9FTNxeP60KnTkGw7wk6mJPYd_dQSjEZmXdBdMCI-8 91
strkit-0.21.0.dist-info/entry_points.txt sha256=juNquDqA5qp80bsViPBVWZCYqBBB7bFPkRONsEX4FP0 45
strkit-0.21.0.dist-info/top_level.txt sha256=ZpGzWFlEnePh0iNOwd2P8ODLLNWrFFhyOoKud986yus 32
strkit-0.21.0.dist-info/RECORD

top_level.txt

catalogs
dist
docs
strkit
tests

entry_points.txt

strkit = strkit.entry:main