step-kit

View on PyPIReverse Dependencies (0)

0.3 step_kit-0.3-py3-none-any.whl

Wheel Details

Project: step-kit
Version: 0.3
Filename: step_kit-0.3-py3-none-any.whl
Download: [link]
Size: 106566
MD5: 07a6ccb8e30df5e4a4003d6429545868
SHA256: 880fe277f134a45184b31009ec4d1f9096c32409cbec95a3d32756fc4cc1a68a
Uploaded: 2025-02-02 11:59:08 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: step-kit
Version: 0.3
Summary: STEP, an acronym for Spatial Transcriptomics Embedding Procedure, is a deep learning-based tool for the analysis of single-cell RNA (scRNA-seq) and spatially resolved transcriptomics (SRT) data. STEP introduces a unified approach to process and analyze multiple samples of scRNA-seq data as well as align several sections of SRT data, disregarding location relationships. Furthermore, STEP conducts integrative analysis across different modalities like scRNA-seq and SRT.
Author: SGGb0nd
Author-Email: lilounan1997[at]gmail.com
Home-Page: https://github.com/SGGb0nd/step
Project-Url: Documentation, https://sggb0nd.github.io/step/
Project-Url: Repository, https://github.com/SGGb0nd/step
License: Apache-2.0
Keywords: spatial transcriptomics,single-cell RNA-seq,deep learning,scRNA-seq,SRT,step,STEP
Classifier: License :: OSI Approved :: Apache Software License
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.12
Requires-Python: >=3.10,<4.0
Requires-Dist: dgl (<2.0.0,>=1.1.2); extra == "cu117"
Requires-Dist: einops (<0.7.0,>=0.6.0)
Requires-Dist: esda (==2.5.1)
Requires-Dist: furo; extra == "docs"
Requires-Dist: grakel
Requires-Dist: ipykernel; extra == "ipykernel"
Requires-Dist: leidenalg (<0.10.0,>=0.9.0)
Requires-Dist: libpysal (==4.8.1)
Requires-Dist: myst-parser; extra == "docs"
Requires-Dist: nbsphinx; extra == "docs"
Requires-Dist: numpy (<2.0.0,>=1.21.2)
Requires-Dist: pydantic
Requires-Dist: rpy2; extra == "r"
Requires-Dist: scanpy (<2.0.0,>=1.10.0)
Requires-Dist: scikit-misc
Requires-Dist: sphinx; extra == "docs"
Requires-Dist: sphinx-autoapi; extra == "docs"
Requires-Dist: sphinx-autodoc-typehints; extra == "docs"
Requires-Dist: sphinx-book-theme; extra == "docs"
Requires-Dist: sphinx-copybutton; extra == "docs"
Requires-Dist: sphinxcontrib-bibtex; extra == "docs"
Requires-Dist: torch (<2.0.0,>=1.13.1); extra == "cu117"
Provides-Extra: cu117
Provides-Extra: docs
Provides-Extra: ipykernel
Provides-Extra: r
Description-Content-Type: text/markdown
[Description omitted; length: 6151 characters]

WHEEL

Wheel-Version: 1.0
Generator: poetry-core 1.9.0
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
step/__init__.py sha256=WKlp2S8W-UDp0dcnrcLPCHBmV0_4wCRFUTooDfvJc_s 2668
step/functionality/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
step/functionality/base.py sha256=8nLkXa1HVcq--9hK9BX805TEHFfXzIqu3qhW6zfa7Oo 4710
step/functionality/comps/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
step/functionality/comps/model_ops.py sha256=JNgLxqcxwaAH33hZ6ngxSHPc7HFt6rf5hZqW5ZUilvY 18994
step/functionality/comps/trainer.py sha256=R7IoCm2G0LmqPj2y2jojnT0bCyigHJ3FXqqfiNmk96U 28737
step/functionality/cross_funcmodel.py sha256=dF8MQTLN0iqBCDs5apVAzFIxqUQ0PuTwq_roWDx81N0 42225
step/functionality/sc_funcmodel.py sha256=tQ0k4GPuQpIfNuzDou2qTvJoEt-jUzbf8nIcwOMo--c 18480
step/functionality/st_funcmodel.py sha256=6-vxCz4b6HCc24q9jH_sVy2xjcz0MaVq0WgcfgmikoQ 27907
step/integration.py sha256=JxEKx3uJ5FB00pDGVbrGOMy_-yYh-mpoGoDrCiD7dh4 19348
step/manager/__init__.py sha256=aYhJkaIwh9oKpj6R21yTqxnTy9xmfNDxjyzR9z4tE84 1151
step/manager/save.py sha256=KWt0p78EWxKyfKe0FXElkXqxPrucrCJfrhs_pqKz1Nk 2955
step/models/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
step/models/clust.py sha256=qOVA_KeerPFOAHHq1RkJ-K2FfLfHyYYQxlPy5pjE3tg 1846
step/models/deconv.py sha256=tIiblB_h4yyFUNNSUy0I0zfgyJAtHPiid7EcWV6kcrM 14598
step/models/distributions.py sha256=MnantvV2n685uyCRq80z3M9srjWqo5-dbd0KpaZaVDw 15639
step/models/extension.py sha256=w5gnMAs7bm-A1rFIFunj6GnxDk6OV192hm41M5WpGEw 12740
step/models/knn_map.py sha256=XCoVmKRhFaVEtxDxE_rtldHUlYcdC3Axl7_DzNnnFO4 2307
step/models/niche/__init__.py sha256=IjjqnRYQRb2aNdT93wrZHFerdDsvrMdzOUEFRgim3g4 31
step/models/niche/helper.py sha256=xxssIoAt049HO1HSMs6xFrd11h0urywfEQGqnktlj2Q 3302
step/models/niche/pipeline.py sha256=RRCJtF6X9znWlZs6wPo446FcF87E9OTyc11nMvxI7To 22737
step/models/nnls.py sha256=B_DwwJuV3l6EplhQnZVNegxRWtb9-5gi3BDGbU9z7Zc 678
step/models/transcriptformer.py sha256=Q83eZ0oR4Z3HRG0s5PJB9tUk4bGaoXiI0gdLAlpOZDE 18227
step/modules/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
step/modules/decoder.py sha256=HtP53Blcs-rq2aiIPMyAiacp7-MT32UlRlEQW7ElNAE 6941
step/modules/gnn.py sha256=yqrtWxQLvSVxjDltswdVmATqCkMp74XXCwZreXohAlM 1847
step/modules/transformer.py sha256=WVhrob2xn1-0BDGyMQfsloOOeke-0u4UH6hyNeIwFqw 3090
step/scmodel.py sha256=Zfob9DqE36z-JK_uFMuZGod4EpnQhPJ8b3bS0ZRJB98 10647
step/stmodel.py sha256=ATR_NTK3Ai6KQYwujBzIiezX6PuyK1ZJTPDemoH7rd0 17101
step/utils/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
step/utils/dataset.py sha256=UM8YsZOMImS8XUw0davQupGhynUaHcBEilqT74sfSNI 41400
step/utils/gbolt.py sha256=CLqMDVs1hXhqNwmbJMXWOhqO2Pxc03w80J2S8b53Q4s 2387
step/utils/metrics.py sha256=janHzjwdIpLAa00FZda4JuLJHfo9ajSmbJL1tUyMoYM 1454
step/utils/misc.py sha256=y6g-kcCFOmlz_Ph5xdZw02P0yis2jbIAiYxK-g4WpW8 15130
step/utils/plotting.py sha256=m0OIjnQ2PHl4GDYxzie_aY_Kh-Q7eBoKeJx_paui2Ac 16000
step/utils/synthetics/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
step/utils/synthetics/pseudo_st.py sha256=eBnQ-RLoHwGZOkf7TRP83AkczCUNo_exbcrL0l5Jsp0 22670
step_kit-0.3.dist-info/LICENSE sha256=WNHhf_5RCaeuKWyq_K39vmp9F28LxKsB4SpomwSZ2L0 11357
step_kit-0.3.dist-info/METADATA sha256=7nZylVw-A7JdZesNtkMyHLMPcXpxfqUHzWEXO7zql-o 8353
step_kit-0.3.dist-info/WHEEL sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg 88
step_kit-0.3.dist-info/RECORD