Wheelodex » Projects » sphae

sphae

View on PyPI — Reverse Dependencies (0)

1.4.5 sphae-1.4.5-py3-none-any.whl

Wheel Details

Project: sphae
Version: 1.4.5
Filename: sphae-1.4.5-py3-none-any.whl
Download: [link]
Size: 88574
MD5: a9031793961d475ee4470fd625792b6f
SHA256: 76137ec5d0068eec9dc0c542fb7a5edd1e9d0377282b7b69304722ff7ae30967
Uploaded: 2024-10-01 03:38:18 +0000

dist-info

METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt

METADATA

Metadata-Version: 2.1
Name: sphae
Version: 1.4.5
Summary: Assembling pure culture phages from both Illumina and Nanopore sequencing technology
Author: Bhavya Papudeshi
Author-Email: npbhavya13[at]gmail.com
Home-Page: https://github.com/linsalrob/sphae
License: The MIT License (MIT)
Keywords: phage 'phage therapy' bioinformatics microbiology bacteria genome genomics
Classifier: Environment :: Console
Classifier: Environment :: MacOS X
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: MIT License
Classifier: Natural Language :: English
Classifier: Operating System :: POSIX :: Linux
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Platform: any
Requires-Dist: snaketool-utils (>=0.0.4)
Requires-Dist: snakemake (>=8.11.6)
Requires-Dist: pyyaml (>=6.0)
Requires-Dist: Click (==8.1.3)
Requires-Dist: metasnek (>=0.0.4)
Requires-Dist: attrmap (>=0.0.7)
Requires-Dist: biopython (>=1.8.1)
Requires-Dist: pandas
Requires-Dist: snakemake-executor-plugin-slurm (>=0.5.1)
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 13426 characters]

WHEEL

Wheel-Version: 1.0
Generator: setuptools (75.1.0)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
sphae/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
sphae/__main__.py sha256=R_1voXsfIViCcqN4PaKGnJf5ZuPJLvcaDxhgQdvdFfE 9047
sphae/sphae.CITATION sha256=Ria6brh3DVzx4SkPN_7R8GOb1ukopQ6C4e3VowFXmEs 686
sphae/sphae.LICENSE sha256=Bgz4bo18GgQ1K3IiDEXI0DVe7AUBkz9CTcuXW8XhAqg 1075
sphae/sphae.VERSION sha256=9DoCksZ0VCotZ2oPT1iKf_vhy6wlCQ3zRLEv8SefeCA 6
sphae/config/config.yaml sha256=fAMqv7vGT_A8qu5eeoYVPoM9b85S6yk3029Ad05QLXI 631
sphae/workflow/Snakefile sha256=0nLkoy7ayfKAng5SlZwF4E7xORnykvhX6KsU6j2pWAM 1366
sphae/workflow/Snakefile-annot sha256=VrwDt43t3OdPrvF2zT8eKVW-PKqN-SsfSm80CgbA1OY 520
sphae/workflow/install.smk sha256=4nLGp2yjg7EAUhS6AaNDD2f0V4EN-dLZaBPoiu3MGoE 2800
sphae/workflow/envs/checkv.yaml sha256=Cbs6uxI165dzRmbT4XajUKSxnUlQigLWk2ckN3-asyE 127
sphae/workflow/envs/flye.yaml sha256=ZgY6NgzAdg4caJ898TlEyQjj1w1w15MqQE3i6KkdYes 99
sphae/workflow/envs/graph.yaml sha256=R44rVKdi50dqAOSbBrWGCi6W6CKrDml9oonuYraUNV4 227
sphae/workflow/envs/medaka.yaml sha256=dKXMd5gkqOH_tgaDdrqdBo5eeyzQf165ZHH2LLGQDv8 98
sphae/workflow/envs/megahit.yaml sha256=laK-dvqnrFlRPt2_I_wwG5RbUSlpKA13X0VdZIxEMzM 158
sphae/workflow/envs/pharokka.yaml sha256=GZwFErWIROC4q5NDxsR2jqbCzzM8Q_wED1emJ41l8Gk 179
sphae/workflow/envs/phold.yaml sha256=mSnk6r0zaXjCio4AfauieuDJTv4IzrQ2kUT6rSM71UI 121
sphae/workflow/envs/phynteny.yaml sha256=tJw-wBmijufw0a0PamyW6CZeKd5r15UZM2UYbvIKoOQ 231
sphae/workflow/envs/qc.yaml sha256=ZIpyOqSvwZ6yaB0A7olpmcwmyI64Ry7h11ONLvTwWV0 182
sphae/workflow/envs/samtools.yaml sha256=Oj-22_1GW1UAOzQaFxxsGobrJXiMaNWwc2Ac-TjaILg 107
sphae/workflow/envs/viralverify.yaml sha256=vDmuQkz-_gDVAt5oP5dQt1R02-BZX9dEkP7lsGLVm7I 112
sphae/workflow/rules/1.preflight-annot.smk sha256=SLeMu6KyJu5hCFQBwqDj-IZ1aTKIh5BFnvJ7Z7Cj7Uw 2419
sphae/workflow/rules/1.preflight.smk sha256=u_xWWRTxHpdKZ-kB2uneFILPAcvm3qH-y2S0keJWp4o 3212
sphae/workflow/rules/10.final-reporting.smk sha256=vMpRBNEK8ppwpJddEgOXGzlSb6Yrwx_Nwfd4RE0c5Qc 10780
sphae/workflow/rules/2.targets-annot.smk sha256=MSXXjLJYSEtoy7fq0aV6aEFBDxSUSkeuioIWlvaDnOQ 2136
sphae/workflow/rules/2.targets.smk sha256=2LKSfI94b4FUHMaptep1cTs3GGSvT3FjPIvDJw_mrXU 7771
sphae/workflow/rules/3.qc_qa.smk sha256=As0EtsueCVQt47chwzzXsZhGbA2H0HT_Qg8RQuI0d58 4640
sphae/workflow/rules/4.assembly.smk sha256=njJvBviOR9OYKWa6EX46bVa_9RFmdM41KTN9LgW54y8 4543
sphae/workflow/rules/4.assembly_no_medaka.smk sha256=Zo3q6bKWHFT6JHFVjg7203mgeIc9s5J6aUnPtrUu-Sw 4233
sphae/workflow/rules/5.checkv.smk sha256=gA2j5Nuxy7QBK5cprhEgq_Rs-cUpadrc9FrAkA4fu5M 2065
sphae/workflow/rules/5.components.smk sha256=JLzJS7eulXHKLJ3k5iBkpR2wkT-j-1aMYa6496ke4bc 1705
sphae/workflow/rules/5.viralverify.smk sha256=Ywvw0ct1FPNL9lh0taP5d3ZS0lx8-EvrOK8Ul6BEsJE 2083
sphae/workflow/rules/6.phage_genome.smk sha256=x8_z1JkciXMeFbyy7jGDLyMw-7pp-Ade_GUPjyPKhq8 4217
sphae/workflow/rules/6.stat_join.smk sha256=JnCXAp8pHBicfPuMq1doYumvydvRJrWi83hLsICZKOY 1091
sphae/workflow/rules/7.pharokka.smk sha256=EWV2s7BHm_FRkKWwTvAjCRZoZX8xVGFnrm7QeXa_32A 4878
sphae/workflow/rules/789.annot.smk sha256=q9LESKSJpZGXytmOl9UH6shpsew408pUns0GQHr9IsI 8934
sphae/workflow/rules/8.phold.smk sha256=e9STsOj8LPxq16OLB6hKUQIdu8igb4XRDVkoc9gLzjI 4186
sphae/workflow/rules/9.phynteny.smk sha256=jx9hM2Hln_9ylo2Fq_-GSagGyRPp0e7OPkaN21HebuE 4906
sphae/workflow/scripts/components.py sha256=_fMrD_mMX7dKp4ZWPTN5yTEToJxWzn4mfuO6j1r9nNU 5812
sphae/workflow/scripts/fastg2gfa sha256=u5fPh6PCze0QnWGWEIPICXPAxfMwerzUEk1qmWyPq3k 32928
sphae/workflow/scripts/joining_stats.py sha256=eKYBW8-rzX6H6k_U99usAKAV2GBvO4GwgY-DpFed89M 1651
sphae/workflow/scripts/pick_phage_contigs.py sha256=B-1rFDwgyqIVYHf5BNi62kijz9LAoXFGACpbZC4-OOc 2087
sphae/workflow/scripts/split_fasta.py sha256=XIluFq4osHzp2aDvadRxkk4Q2v_S1eM5-q2pu_S01vc 1302
sphae/workflow/scripts/summary-annot.py sha256=RH-avPoryjGb-9sdpr8lfe0JLPvzdL4b0cjaLpX85Kc 6011
sphae/workflow/scripts/summary.py sha256=OE969i_q-AYAj66kEto4oRQU9qN_XJEB47HXEIRbUHI 28836
sphae/workflow/scripts/summary_annot_functions.py sha256=1eAcIbZ5rVzF2xLGw7RK6mdNcShOPxnYL1H5SO5-MG0 1214
sphae/workflow/scripts/summary_functions.py sha256=4m4Z8hpnhVZbTsocnAFJUES8u0hrmQCV1NZG2w17i2E 3053
sphae/workflow/scripts/graph_utils/build_utils.py sha256=Uy4ICZ9P5K7uVcd7G5w5VI3SA4OXhezXgWAQ_QgKKow 20327
sphae/workflow/scripts/roblib/__init__.py sha256=8KGvyuJsVnW44uNhtwGnIKscy7Zytw0fTCqLd_uzbuY 1547
sphae/workflow/scripts/roblib/alignments.py sha256=4brXvJNGyLPz9Fzaeg4CemPMiGZekd8TeguJ-_iMQMs 1127
sphae/workflow/scripts/roblib/bcolors.py sha256=tsf0t2aJD7n3AoI_Ic9xJlLilyTyKCH0g1TMB0--82E 571
sphae/workflow/scripts/roblib/blast.py sha256=wzi-OhN67oL1AP54pqYoTmwhTFZKftHQ9Hd3J67L6yM 1877
sphae/workflow/scripts/roblib/colours.py sha256=K_Lj4gJ7yeOjutwp9ZFXYGZI8cRxsZANAS3uF6XAa5w 2089
sphae/workflow/scripts/roblib/date_parsing.py sha256=jOwMbJk1XuqeozcPCfjetVdpS-jyvWCYuXWc7VwWdhc 4646
sphae/workflow/scripts/roblib/dna.py sha256=RS_p6CtbxJPgLvFYAaRI588sVi0NOCFksY-7HYzBmUU 1390
sphae/workflow/scripts/roblib/dnadist.py sha256=imj6Dy77Wull-geV4HJvvraI4xb-DhMhnV-xW-s_iCo 1818
sphae/workflow/scripts/roblib/file_chooser.py sha256=8sMhXLbJxO0gNZK_bs5fyF9lDdHYv2N73y57DO36Nmc 787
sphae/workflow/scripts/roblib/functions.py sha256=YXbH0samDJZKT1naF_pDsG9sM9YwaH5lTPgBx7GNj8U 2914
sphae/workflow/scripts/roblib/genbank.py sha256=xQNpsGP9htL8cmRsOk5vxYNDC7OHyUbmWvC6Nk6tQKU 10765
sphae/workflow/scripts/roblib/geography.py sha256=42oU1uT20K3hK3uKdMk44X3gxK9YHmqD8P4wCWHuS_I 1923
sphae/workflow/scripts/roblib/newick.py sha256=sMeK2pRLR0LhMAPQQUoK_MAXFfGjfCQTbIP2jVslXS8 6633
sphae/workflow/scripts/roblib/rob_error.py sha256=T4gZICLa7TN70dsMutFrYIZ_PYo70_YaEbsjryXHQcc 879
sphae/workflow/scripts/roblib/seqio_filter.py sha256=KcNVQHfsXzKFGvU1W7na6zC08OtLY8PxD-nUvYcKp7s 2355
sphae/workflow/scripts/roblib/sequences.py sha256=NuGZR0lIXdXIN353f08u-1jhu8hUXtj5lUmJ9Wa1WgQ 10890
sphae/workflow/scripts/roblib/stats.py sha256=-T8Zn0DMEcEktIh3vHoHlpCOs8cjrQJM7KaFNY4PSBA 2790
sphae/workflow/scripts/roblib/strings.py sha256=tGHTdu2aAG6mgD-SNUyz-NqlpoVXQhMlYik0xCu_CJ4 193
sphae/workflow/scripts/roblib/translate.py sha256=1ptsB-m2vsyKfovMeqyp1x0Ju1el6zWtgsr91qcO-3M 4840
sphae-1.4.5.data/data/README.md sha256=8fMtkBV31KdqU90_zIRjknY67nWspS6yBUsxbOkBtFM 13426
sphae-1.4.5.dist-info/LICENSE sha256=TOwq4A0WVsJg2qzPtrEkkZPae_43ILd_HmaLvNJLeX4 1068
sphae-1.4.5.dist-info/METADATA sha256=DnwR22f-vhAbnScinh-A7CJK49Rj_JvMLWuXI2qkwCw 14594
sphae-1.4.5.dist-info/WHEEL sha256=GV9aMThwP_4oNCtvEC2ec3qUYutgWeAzklro_0m4WJQ 91
sphae-1.4.5.dist-info/entry_points.txt sha256=cigaH7TsnMkJeKQcyX447_GmJdtIsTBsuj6vufDv82I 46
sphae-1.4.5.dist-info/top_level.txt sha256=9UBV_-0ZfsUERXLbaajxeyKzMjCkhtx3LvSTUuUaNuQ 6
sphae-1.4.5.dist-info/RECORD — —

top_level.txt

sphae

entry_points.txt

[console_scripts]
sphae = sphae.__main__:main