sourmash

View on PyPIReverse Dependencies (21)

4.8.14 sourmash-4.8.14-py3-none-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
sourmash-4.8.14-py3-none-manylinux_2_17_aarch64.manylinux2014_aarch64.whl
sourmash-4.8.14-py3-none-win_amd64.whl
sourmash-4.8.14-py3-none-macosx_11_0_x86_64.whl
sourmash-4.8.14-py3-none-macosx_11_0_arm64.whl

Wheel Details

Project: sourmash
Version: 4.8.14
Filename: sourmash-4.8.14-py3-none-win_amd64.whl
Download: [link]
Size: 2141821
MD5: b6f230e08095979303757409c27b6f4f
SHA256: 5d4402662108a3d74a65896316b84c54c2590caabdde88f2e9c440a4cf1498d0
Uploaded: 2025-01-15 14:53:36 +0000

dist-info

METADATA

Metadata-Version: 2.4
Name: sourmash
Version: 4.8.14
Summary: tools for comparing biological sequences with k-mer sketches
Author: Luiz Irber, N. Tessa Pierce-Ward, Mohamed Abuelanin, Harriet Alexander, Abhishek Anant, Keya Barve, Colton Baumler, Olga Botvinnik, Phillip Brooks, Luca Cappelletti, Peter Cock, Daniel Dsouza, Jade Gardner, Laurent Gautier, Tim Head, Mahmudur Rahman Hera, Hannah Eve Houts, Lisa K. Johnson, Fabian Klötzl, David Koslicki, Katrin Leinweber, Marisa Lim, Ricky Lim, Bradley Nelson, Ivan Ogasawara, Taylor Reiter, Camille Scott, Andreas Sjödin, Connor T. Skennerton, Jason Stajich, Daniel Standage, S. Joshua Swamidass, Connor Tiffany, Pranathi Vemuri, Erik Young, Nick H, C. Titus Brown
Author-Email: Luiz Irber <luiz[at]sourmash.bio>, N. Tessa Pierce-Ward <tessa[at]sourmash.bio>, C. Titus Brown <titus[at]idyll.org>
Maintainer-Email: "Luiz C. Irber, Jr" <luiz[at]sourmash.bio>, "C. Titus Brown" <titus[at]idyll.org>, "N. Tessa Pierce-Ward" <ntpierce[at]ucdavis.edu>
Project-Url: Homepage, https://sourmash.bio/
Project-Url: Documentation, https://sourmash.readthedocs.io
Project-Url: CI, https://github.com/sourmash-bio/sourmash/actions
Project-Url: Source, https://github.com/sourmash-bio/sourmash
Project-Url: Tracker, https://github.com/sourmash-bio/sourmash/issues
License: BSD-3-Clause
Keywords: minhash,bioinformatics
Classifier: Development Status :: 5 - Production/Stable
Classifier: Environment :: Console
Classifier: Environment :: MacOS X
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: BSD License
Classifier: Natural Language :: English
Classifier: Operating System :: POSIX :: Linux
Classifier: Operating System :: MacOS :: MacOS X
Classifier: Programming Language :: Rust
Classifier: Programming Language :: Python :: 3.12
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.10
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Python: >=3.10
Requires-Dist: screed (<2,>=1.1.3)
Requires-Dist: cffi (>=1.14.0)
Requires-Dist: numpy
Requires-Dist: matplotlib
Requires-Dist: scipy
Requires-Dist: deprecation (>=2.0.6)
Requires-Dist: cachetools (<6,>=4)
Requires-Dist: bitstring (<5,>=3.1.9)
Requires-Dist: pytest (<8.4.0,>=6.2.4); extra == "test"
Requires-Dist: pytest-cov (<7.0,>=4); extra == "test"
Requires-Dist: pytest-xdist (>=3.1); extra == "test"
Requires-Dist: pyyaml (<7,>=6); extra == "test"
Requires-Dist: diff-cover (>=7.3); extra == "test"
Requires-Dist: covdefaults (>=2.2.2); extra == "test"
Requires-Dist: recommonmark; extra == "test"
Requires-Dist: hypothesis; extra == "test"
Requires-Dist: build; extra == "test"
Requires-Dist: jupyter; extra == "demo"
Requires-Dist: jupyter-client; extra == "demo"
Requires-Dist: ipython; extra == "demo"
Requires-Dist: sphinx (<9,>=6); extra == "doc"
Requires-Dist: myst-parser; extra == "doc"
Requires-Dist: jinja2; extra == "doc"
Requires-Dist: alabaster; extra == "doc"
Requires-Dist: sphinxcontrib-napoleon; extra == "doc"
Requires-Dist: nbsphinx; extra == "doc"
Requires-Dist: sphinx-design (==0.6.1); extra == "doc"
Requires-Dist: ipython; extra == "doc"
Requires-Dist: docutils (<0.22,>=0.17.1); extra == "doc"
Requires-Dist: ipfshttpclient (>=0.4.13); extra == "storage"
Requires-Dist: redis; extra == "storage"
Requires-Dist: sourmash[demo,doc,storage,test]; extra == "all"
Provides-Extra: test
Provides-Extra: demo
Provides-Extra: doc
Provides-Extra: storage
Provides-Extra: all
Description-Content-Type: text/markdown; charset=UTF-8; variant=GFM
License-File: LICENSE
[Description omitted; length: 5988 characters]

WHEEL

Wheel-Version: 1.0
Generator: maturin (1.8.1)
Root-Is-Purelib: false
Tag: py3-none-win_amd64

RECORD

Path Digest Size
sourmash-4.8.14.dist-info/METADATA sha256=FafuGla3yXWfjVV_HjadcX0KraEWCcfcjAZsZYgKi9A 9691
sourmash-4.8.14.dist-info/WHEEL sha256=0Ei6eJSnFKalVc4j1oeJi3sd1RljjNRCmAVYi5kThzI 93
sourmash-4.8.14.dist-info/entry_points.txt sha256=-_qPsYliTzhxqwQrDiL4Mgbru1bZGK6Dmy3CXmjgRx4 50
sourmash-4.8.14.dist-info/licenses/LICENSE sha256=KXCjlzckLj4BDEXuVJgdncRekANzooKPBvQC1cHhxzI 1931
sourmash/cli/.gitignore sha256=YlIJP4EDslv3fjFxv8mVK6nJZEgK6PMm3JxLsS5q6ig 14
sourmash/cli/categorize.py sha256=uCIq_VQEIZF7FiV4pqm9ZmTeJVvdbhi3a3EGpGWhqvA 1223
sourmash/cli/compare.py sha256=JJMjN_wGEBMQo2lsrClSSrkqbEfP3IR7GWL6ZPIAWL8 4248
sourmash/cli/compute.py sha256=n68sceV5_HaOi_KPwMquaSniLz0rVombM4lKWhTLsbo 5027
sourmash/cli/gather.py sha256=0_9XTdGq3Y0bU7Hc7NVz9bv-LJcjfNKFqys0IQCwMI8 6773
sourmash/cli/import_csv.py sha256=KCoCtH9KbLJQ0i-3hrhuUuu5tv4DO7Wom5Ztyy7LfxA 689
sourmash/cli/index.py sha256=8kBeQGRsRYKtsW5ftsFxIunb4n08WibiAZ0h35jc9gs 2922
sourmash/cli/info.py sha256=m4HjdDVMAkIbgI-BMI5W3s_my2zCw9VmdsFYwouuGIc 963
sourmash/cli/lca/classify.py sha256=VI96a-xe_6GmzQiEvyui2QGDP0wS8jUbM5BSb5Vc-ds 1464
sourmash/cli/lca/compare_csv.py sha256=a1b30QJQU-niUJ_8ZXQlZJPNuTZTpL11CCjShaQegDs 1483
sourmash/cli/lca/index.py sha256=w9MaTphaWE3ZAYuvr2N3lxviQO6jnC70LWt2iSRXokk 2684
sourmash/cli/lca/rankinfo.py sha256=QQUe2da6oQTLCUEmIACJX7cOYBDnbfxuUzS9JJkOJb4 747
sourmash/cli/lca/summarize.py sha256=YHQaMvAjdUVWtXpcKxfa9pvG8w5X6VK1J0tmZ6AmJvc 1523
sourmash/cli/lca/__init__.py sha256=Kdim7imEGRlgUQMFwpMM1IqxMIngLGHyaZVxFyCXo6c 1225
sourmash/cli/migrate.py sha256=lfmzgHARDkMGuAlPT4sRVF0fhmGNlgzX-vsVS-Ja8Xw 311
sourmash/cli/multigather.py sha256=FleSj8mSK3L7qPLEhMm29EexAF_xloX3a3gPoBEB-GM 3827
sourmash/cli/plot.py sha256=MrqBFcIB7ASZlLoPqQnA2WOe29mxdAttdCq1UpZBoB0 2512
sourmash/cli/prefetch.py sha256=tCASq3HGwYfPalDKBVAwJ08c5vDGyfJeIeXiCB_Wvxk 2596
sourmash/cli/sbt_combine.py sha256=pordSa7JB9_Ok5nCvdhbmh0GjRuvUz6HLGOhCOSfWME 467
sourmash/cli/scripts/__init__.py sha256=Lhlzr0JeF9lHDZatbYQFre-zDoHpnmH_9Bsb_sDBrh0 1760
sourmash/cli/search.py sha256=buX7J9rZLaF70lNDjkmqE0082QvstCKqREkp4N7v7q4 4629
sourmash/cli/sig/cat.py sha256=inFNu9KI-k-_Y_Kim1W6kodJiNaLZMSbAHaxcC2kY_o 1739
sourmash/cli/sig/check.py sha256=TsPbE5yCshKGdcxbTOO7_90DfdeMCMdMQ1kq5gFtddw 3245
sourmash/cli/sig/collect.py sha256=5TmHVXlUy1ns4QIFDrNP1bDh6NQLAIsrYiVlEEvcULo 2661
sourmash/cli/sig/describe.py sha256=15fE9S7vfr76WlAvelalu8X3pczYATNDzioEOMfazn0 1656
sourmash/cli/sig/downsample.py sha256=P1p86F_D0GG2LLxAawrh_Kdbt8ryIG3m1iEq8VhfjkI 2053
sourmash/cli/sig/export.py sha256=uRP2HzwOLG_NnzHEmTYqnwKGlpi1fdbt8MNI8E2FtZo 1066
sourmash/cli/sig/extract.py sha256=bCWreqGpgNjDhMLpeOmxuTshQ2i6Sb387-tLiIlkc8A 2628
sourmash/cli/sig/fileinfo.py sha256=osO31kYs-U6fMs5XKIJdjS8ZdXwpQ8PmSUAZpmkGFeY 1213
sourmash/cli/sig/filter.py sha256=yCvJ16rndTo_UtQY45v-0pjbg3w9y_C-hM00TbMXxvM 1984
sourmash/cli/sig/flatten.py sha256=4RojycSfMVYrhLVMrD9QHxDT8sRIEAMWuf4IAmUWA8M 1749
sourmash/cli/sig/grep.py sha256=H7w2jPJt2NDpOuTrhr-12Scab6Blp12czGxFP0VkI2k 3225
sourmash/cli/sig/inflate.py sha256=50eFvHdLYk4N8-VED4n0IJz48-QGv5lmPhSct0Af5zw 956
sourmash/cli/sig/ingest.py sha256=oT8bljFG7MBuAbST89QG_B0OaCcRNTFnyvIRdVyOYxU 1360
sourmash/cli/sig/intersect.py sha256=ohSRQxLFUdb6LJRCz-xn6YmUJGa0L0Vu4ciOmTCb7rk 1970
sourmash/cli/sig/kmers.py sha256=CGzG7TraIn6r1ElGcPPrtKJ_S3OE0FnJ8Iv2dQ0tKos 3886
sourmash/cli/sig/manifest.py sha256=8ONKi4SzyaAvw7G6W3NMhPIZlcK_2VP4qSZ31ocjP6I 1666
sourmash/cli/sig/merge.py sha256=skyU_zEn4_PynOelgIJVwz6g2lROxcoeZ8uPb4yjgEY 1990
sourmash/cli/sig/overlap.py sha256=2iPszLGdS2NzQIqJ_ErPkzx_XSZq6I-_IiDXNn4mmwE 1471
sourmash/cli/sig/rename.py sha256=mDtaWwI_0qnMcVp0nyfqAQ2TK-_Fd-GgiUxNZhkifVg 1716
sourmash/cli/sig/split.py sha256=f-eRlTrCPy0MHbE-_o43S5QPz1K69Z2GzebYK2qJ1Wk 2456
sourmash/cli/sig/subtract.py sha256=sWRMsGD48plf3eFMRSSUI3B4A2FsqajWuuYtm0qnpSY 1793
sourmash/cli/sig/__init__.py sha256=BOA3bQAYbm9Hngh0jSjyM3uTRBBL1wGkUr33ImWUCU0 1672
sourmash/cli/sketch/dna.py sha256=Wkex3eUkkeqjVYZJvVkrWKOzJ_Zs9Wcih1mbszp8WM0 3322
sourmash/cli/sketch/fromfile.py sha256=2pdTzyqGsro0_RJUhm4Vw_Hm80Kt5gPaGsOR12ML26A 2999
sourmash/cli/sketch/protein.py sha256=MeTMpHNQGpXe1XdJggv3KHShXbqdG_rcA6IafSl_h2s 3500
sourmash/cli/sketch/translate.py sha256=6nd7VywGFj4cH0xAIRMYBFRPVBHi45y8Uub39-f-PmU 3527
sourmash/cli/sketch/__init__.py sha256=Ye2ip2665t3-TyHRcuRofBRt3B3hAinSUFPPgaDQRm0 1291
sourmash/cli/storage/convert.py sha256=qnmSovR2St90VDSkoqAH18ynGzc2LL23UsfYVaSOPx4 415
sourmash/cli/storage/__init__.py sha256=2w2rWJvfBnASzlYTENkAqfoXp4ns2PahTxvcZ-SIgaU 1141
sourmash/cli/tax/annotate.py sha256=AOttZWl0z_d_na6HBwkhLNTwQckTEnm-GOBYTT4CiG4 3146
sourmash/cli/tax/genome.py sha256=HSxfPENJVqhCuGhRds63VdNe8Qn5Y_oMa-hKEGvbBKU 5255
sourmash/cli/tax/grep.py sha256=lRNAXxCHujTkMDL9wh5jYs1-C1WyvxEvXPoAhr4s_iY 2648
sourmash/cli/tax/metagenome.py sha256=XFV98nbtbx8DOJzDONU4ImWi92zDzyWLPnov5zhS13Q 4969
sourmash/cli/tax/prepare.py sha256=jxY1oPVF6yzDoHA_5lN880GPMKpWQX_gp6BpJM4enXw 2151
sourmash/cli/tax/summarize.py sha256=571TKCBJSReR2BSLom7HxX4aJsSaz27gHmmi1S7AZog 2228
sourmash/cli/tax/__init__.py sha256=3Rn4t13bKPP_lfEVQbqwGV8MVE3y1q7GuwL23hO7A78 1333
sourmash/cli/utils.py sha256=NN6Q4ZIkn_MPL4YDK6euUmaOBVh-b3LzKAlc7JLHDxE 9597
sourmash/cli/watch.py sha256=NK6onOCFX0yuDi-I57W3cctOsPCZqISYVTVu2hsA87U 1225
sourmash/cli/__init__.py sha256=-pev10Y1jY47o08xuIJ01x2NEGtS-fKC_Qnocrrfkr4 5805
sourmash/commands.py sha256=p6t0dcXSBEpVI2wbCvcAsN0tXa2zXxZD43EsWSzaY2g 61064
sourmash/command_compute.py sha256=L2wNByj-YhNlWQGYpqMtoOPEqX3pFWrbRThD3SQL6uQ 18869
sourmash/command_sketch.py sha256=ID9iWBvRNoSKJSo-xMyHp6cyXvB9he4LNC6PDtMMNMg 36614
sourmash/compare.py sha256=BLx_03fpITvPr7TXAD93CxOexRn9xefO85BU6J5l5zY 13780
sourmash/distance_utils.py sha256=M1OyR3C2skUxmAWRXOXe8l2EcYZrZ4sT8zeKr9kbWbQ 14293
sourmash/exceptions.py sha256=c32bnq3_iHNYYdqQ_DZEr07B2C7tvdeevHI9m0GuYvY 2057
sourmash/fig.py sha256=nhqzT1ZH3Q8tXbOg_RYHsQiy2nhgh878GZNFVsNDw18 2477
sourmash/hll.py sha256=rVXOhvlHKR-DYYy5UM9UhJxGlmTLQbt4TFudEMmhz_I 3869
sourmash/index/revindex.py sha256=ZjlyRDqfPyzRmqxWCulpuZwRgWqXhnDrf7t3e-pEK3o 8379
sourmash/index/sqlite_index.py sha256=3C-OzwsxgZtL1ylgUX-UVArGtoCuUlWdufCp7ASJHAY 41479
sourmash/index/__init__.py sha256=pe06GojcOhLgy2JeZM7jJCbzGa9LTwOm7UZDA2QhO6A 44656
sourmash/lca/command_classify.py sha256=7uCYNAU25705CsiATFiIlxnOOE-Ca6PLkzlbe0VCHPc 5502
sourmash/lca/command_compare_csv.py sha256=dO1poaOnHLd4dUe1CE3S6T-wtM3tU1vtTNDcthdpdFs 3374
sourmash/lca/command_index.py sha256=XmDHk4aO-4n3nsUQ1USAPpVjux9NYOUvxsS3cDVTCPk 13720
sourmash/lca/command_rankinfo.py sha256=iFQs8AymnpiqwLdWHihhIgKZ4AnnmgWtqUi6P_LXQ0E 2451
sourmash/lca/command_summarize.py sha256=NAxcNVcGVbQBVJFjMZokNkmhXov42_htdRq63ME6gQo 6831
sourmash/lca/lca_db.py sha256=cDIPXTb78EsNVlgD-0cJepGSBEr0-iT3c4NJ8FLZbY4 25311
sourmash/lca/lca_utils.py sha256=ZWFmnoDB3r1C9cIni8ABFWUUAPi4-k-jEKCQ6x14Dm8 7562
sourmash/lca/__init__.py sha256=c2pFiibZQNIAztJrfCinOBkZISdXB1jjJXoluuSt2-M 440
sourmash/lca/__main__.py sha256=uBCXDEcvM4XNQgwTCpmH23vFaDuf2UVuNrLEQV9SbbY 1095
sourmash/logging.py sha256=sS8CkVKtW6xIASPjRg4R3WzG7MEybwNOTuewfvD-oX4 4072
sourmash/manifest.py sha256=jJVRSAokbGJj8ngjHi6LSb1OpdwpVwqzHPyeCYkNLjc 12024
sourmash/minhash.py sha256=WxALEqg4Fo5f8WqZsKCS_in0eaHeN7O9HZRMW4nITh0 43452
sourmash/nodegraph.py sha256=SaLCPaNu-Soy7P90-J39XiIJxg8qivlcij1Tqs3OAVQ 5623
sourmash/np_utils.py sha256=fWUevQZmIq3nQl2dHVmSefVFQNeFP8O-5VzinVUYZZM 849
sourmash/picklist.py sha256=GkPdchkYf7b-r_CJ_akEqMnHtTKZeitbu4qFu8TpI9E 11220
sourmash/plugins.py sha256=tQWP2x4Fk703iKUWpDT6pkIgXE6rpLZiYx-q0YuSYPc 6522
sourmash/save_load.py sha256=LjZwNnWONQIBRcHGhhyeo46AnPbgLbc7cBF8NC0wIbY 16280
sourmash/sbt.py sha256=bueSKe-jV_pU0Y96XLRwg4NHSgvI2pg87kg0bX150mY 52745
sourmash/sbtmh.py sha256=JeYcOI2M7twLG5seTtKU2UQUA6h6vt-U7XhhU7pl_3s 2258
sourmash/sbt_storage.py sha256=-KzpMs4UwD2-7CyzGBZXgDerGC0g786Q_KJ9HwVVmaU 16328
sourmash/search.py sha256=dl4TzhpDhETeo5-EjWLHOuxRSIlAHRqNn5-mcioE9D4 35003
sourmash/sig/grep.py sha256=QTO6ecGwyFGe4ooQSOSEPyRNkMM30z5iTPJWXfNehHI 4703
sourmash/sig/__init__.py sha256=iWxhLLaKwei7_qXw2N4q9EzTrVoFnHhZFDzZXPXSeeE 83
sourmash/sig/__main__.py sha256=C8V6ryHUnUKa1AKMhjOSYLxfOVmDRdVJC2fl6T-F-JM 54926
sourmash/signature.py sha256=JlZNgS2faMfGXPO0pztEyfLpMTD84MQbcNVWFU49nPA 15542
sourmash/sketchcomparison.py sha256=7-INyuka5epH22hxDmqTuE1cNBoYLwzYTYLnvrn51Js 9960
sourmash/sourmash_args.py sha256=mhSPhPShf92cSQKiOAjC9VK8FP8MglqvIW6c923oQ8k 27466
sourmash/sqlite_utils.py sha256=Rv71zgZFj2HvU7vOEQM1vEkQj-977Wf4tyfyr9E12rU 2491
sourmash/tax/tax_utils.py sha256=cugNpDYqCTjb1S0Yw_YTo5N85u0yFEsYJquadqPaun4 110382
sourmash/tax/__init__.py sha256=8zoe-LMCDMBGQx7g4SDoHmo7kCkLVRisl0YjBxG8Tds 28
sourmash/tax/__main__.py sha256=dyeKAoc7nFoCmqFm94_ourWhaOIaKnAjL5JebXLUb-g 24408
sourmash/utils.py sha256=_N1hPsr44ao0M4rBOYSSG70wQAhjZVc_X17LQQnnMqY 2147
sourmash/__init__.py sha256=Zrqm86_VxsJM6OAYfy2vQOruimiZoRQIm1RVQF90wrw 4405
sourmash/__main__.py sha256=IGR5LyGM5HBtnPTdhylPYznc-W_cJYRNXNPGA8VV5HU 597
sourmash/_lowlevel/__init__.py sha256=GLtsKDCwsFo0m1LCpsWsfNkiWnTEazfVuDYUwTSLT1c 140
sourmash/_lowlevel/ffi.py sha256=L5ixq137ctwaiDLHMjmTarFyZkeeOYzQxTZ7LdYH6I4 18692
sourmash/_lowlevel/_lowlevel.dll sha256=5vLOa9rxzCll2x_Hi2g0NexxTaPkQr1CHoQ_mB8Z6fE 4784128
sourmash-4.8.14.dist-info/RECORD

entry_points.txt

sourmash = sourmash.__main__:main