Reverse Dependencies of sourmash

The following projects have a declared dependency on sourmash:

• amira-amr — Amira
• approximate-cluster-identities — A package to calculate and visualise approximate cluster identities for a large number of short nucleotide sequences using minimizers.
• BacterialTyper — no summary
• expam — Metagenomic profiling using a reference phylogeny
• genomics-data-index — Indexes genomics data (nucleotide variants, kmers, MLST) for fast querying of features.
• get-some-ncbi-genomes — download one or more NCBI genomes by accession
• krepe — A package to count k-mers and calculate/plot De Bruijn graphs, occurence bar graphs, venn diagrams, and dendrograms.
• mashpit — A sketch-based surveillance platform
• orpheum — Sencha is a Python package for directly translating RNA-seq reads into coding protein sequence.
• sencha — Sencha is a Python package for directly translating RNA-seq reads into coding protein sequence.
• sourmash — tools for comparing biological sequences with k-mer sketches
• sourmash-mixers — this meta-package installs a collection of sourmash plugins!
• sourmash-plugin-abundhist — sourmash plugin to calculate abundance profiles.
• sourmash-plugin-betterplot — sourmash plugin for improved plotting/viz and cluster examination.
• sourmash-plugin-commonhash — sourmash plugin to calculate common hashes across multiple sketches.
• sourmash-plugin-containment-search — sourmash plugin for improved output of containment search for metagenomes
• sourmash-plugin-pangenomics — sourmash plugin to do pangenomics.
• sourmash-plugin-sketchall — sourmash plugin to sketch many sequence files
• sourmash-plugin-venn — sourmash plugin to build venn diagrams - DEPRECATED. Use 'sourmash_plugin_betterplot' instead.
• sourmash-utils — Python utilities for sourmash plugins and scripts