snakecdysis

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2.0.0 snakecdysis-2.0.0-py3-none-any.whl

Wheel Details

Project: snakecdysis
Version: 2.0.0
Filename: snakecdysis-2.0.0-py3-none-any.whl
Download: [link]
Size: 317512
MD5: 61a76b07bcdca1e15a876edd51afe56a
SHA256: c307d93cad4c00511313d0ca98c620764fff9c23038b4ed0b0b24de38416d339
Uploaded: 2025-02-13 09:00:56 +0000

dist-info

METADATA

Metadata-Version: 2.2
Name: snakecdysis
Version: 2.0.0
Summary: You want to wrap your best snakemake workflow to be easy install and run, Snakecdysis is for you !!!!! Tha aim of Snakecdysis is to easy-wrapped snakemake workflow as python package and then build sub-commands to manage this. !!!!!
Author-Email: "Ravel Sebastien (CIRAD)" <sebastien.ravel[at]cirad.fr>
Project-Url: Homepage, https://forge.ird.fr/phim/sravel/snakecdysis
Project-Url: Downloads, https://forge.ird.fr/phim/sravel/snakecdysis/-/releases
Project-Url: Bug Tracker, https://forge.ird.fr/phim/sravel/snakecdysis/issues
Project-Url: Documentation, https://snakecdysis.readthedocs.io/en/latest/
Project-Url: Source Code, https://forge.ird.fr/phim/sravel/snakecdysis
License: MIT License Copyright (c) 2023 PHIM / sravel Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
Keywords: snakemake,wrapper,installation,HPC
Classifier: Development Status :: 5 - Production/Stable
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: End Users/Desktop
Classifier: License :: CeCILL-C Free Software License Agreement (CECILL-C)
Classifier: License :: Free for non-commercial use
Classifier: License :: OSI Approved :: MIT License
Classifier: Natural Language :: English
Classifier: Operating System :: POSIX :: Linux
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.12
Classifier: Topic :: Scientific/Engineering
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Python: >=3.11
Requires-Dist: PyYAML
Requires-Dist: click (>=8.0.3)
Requires-Dist: cookiecutter
Requires-Dist: docutils
Requires-Dist: python-gitlab
Requires-Dist: snakemake (>=8.0.0)
Requires-Dist: snakemake-executor-plugin-slurm
Requires-Dist: tqdm
Requires-Dist: pulp (<2.8)
Requires-Dist: pandas
Requires-Dist: sphinx_click; extra == "doc"
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Requires-Dist: sphinx_rtd_theme; extra == "doc"
Requires-Dist: autodocsumm (>=0.1.13); extra == "doc"
Requires-Dist: autodoc (>=0.3); extra == "doc"
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Requires-Dist: sphinxcontrib-napoleon (>=0.7); extra == "doc"
Requires-Dist: sphinxcontrib-autoprogram; extra == "doc"
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Requires-Dist: sphinx_design; extra == "doc"
Requires-Dist: pandas; extra == "doc"
Requires-Dist: toml; extra == "doc"
Provides-Extra: doc
Description-Content-Type: text/x-rst
License-File: LICENSE
[Description omitted; length: 1885 characters]

WHEEL

Wheel-Version: 1.0
Generator: setuptools (75.8.0)
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Tag: py3-none-any

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top_level.txt

snakecdysis

entry_points.txt

generate_template = snakecdysis.scripts.generate_template:main
snakecdysis = snakecdysis.__main__:main
snakecdysis = __init__