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SNAF

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0.7.0 SNAF-0.7.0-py3-none-any.whl

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Project: SNAF
Version: 0.7.0
Filename: SNAF-0.7.0-py3-none-any.whl
Download: [link]
Size: 604429
MD5: 9df6db5df7d04b2e371652d0f9478804
SHA256: c2a493cc06082afe917cdc86bbc889d8c6181d5f6485128762cce8fd3aa13bfd
Uploaded: 2023-05-23 14:59:39 +0000

dist-info

METADATA · WHEEL · RECORD · top_level.txt

METADATA

Metadata-Version: 2.1
Name: SNAF
Version: 0.7.0
Summary: A Python package to predict, prioritize and visualize splicing derived neoantigens, including MHC-bound peptides (T cell antigen) and altered surface protein (B cell antigen)
Author: Guangyuan(Frank) Li
Author-Email: li2g2[at]mail.uc.edu
Maintainer: Guangyuan(Frank) Li
Maintainer-Email: li2g2[at]mail.uc.edu
Home-Page: https://github.com/frankligy/SNAF
Project-Url: Documentation, https://snaf.readthedocs.io
Requires-Python: >=3.7
Requires-Dist: tensorflow (==2.3.0)
Requires-Dist: pandas (==1.3.4)
Requires-Dist: numpy (==1.18.5)
Requires-Dist: numba (==0.53.0)
Requires-Dist: mhcflurry (==2.0.5)
Requires-Dist: h5py (==2.10.0)
Requires-Dist: anndata (==0.7.6)
Requires-Dist: seaborn (==0.11.2)
Requires-Dist: biopython (==1.79)
Requires-Dist: requests (==2.26.0)
Requires-Dist: xmltodict (==0.12.0)
Requires-Dist: xmltramp2 (==3.1.1)
Requires-Dist: tqdm (==4.62.3)
Requires-Dist: scipy (==1.4.1)
Requires-Dist: statsmodels (==0.13.1)
Requires-Dist: lifelines (==0.26.4)
Requires-Dist: umap-learn (==0.5.2)
Requires-Dist: plotly (==5.4.0)
Requires-Dist: Werkzeug (==2.0.2)
Requires-Dist: dash (==2.0.0)
Requires-Dist: dash-dangerously-set-inner-html (==0.0.2)
Requires-Dist: mygene (==3.2.2)
Description-Content-Type: text/markdown
[Description omitted; length: 1991 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.36.2)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
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snaf/__init__.py sha256=fNa0tuOyncPKs7n4JXr6GgtqkZBtVs52HsfrBaYWQFA 5607
snaf/binding.py sha256=ZoROIlThdikZkbsisL6tl86Pia4qe_UW-sdrYjHW0dc 6118
snaf/data_io.py sha256=RVbIA5nUYORtacV8c6he-qPqaeKkbPxPJeAO_7dSuAQ 2494
snaf/downstream.py sha256=aLpAotBHP1HYzU-hDey1uUgvU8VCAe0q62AKi3Lz6us 53266
snaf/gtex.py sha256=y-yY9XQrqlV-Y7ZQJmILVGkXIX35w7aLgp8BrI6Z_Ug 21880
snaf/gtex_viewer.py sha256=DjWCdKM9I1NLvUj7NTcVRkC_aOCf1u0HkqmyCjQ0RTE 13841
snaf/mqpar.xml sha256=kPGjuVRTPk8XlEnaaw-z9-gk3lsQRe6niUe2L5NicC0 23963
snaf/proteomics.py sha256=pYfi66nY14wHVUszF6lpKI1g-tb0HLckKsD3AglsHdM 18302
snaf/snaf.py sha256=fUQjTNksagbvkCcfPTuEhSOJ1DpEDQCz2L_3vdrNZkE 70070
snaf/visualize.py sha256=bEgHrgEyUrp2Q-OTOaQf-Pb47H_eNKD1slAiE1nUXcg 6529
snaf/dash_app/__init__.py sha256=G8FM09V6abo6mzxSKOP-zmhEqnnH87rxU2cdiLwxpd4 73
snaf/dash_app/app.py sha256=zd9PwEwyYkLgKhnMuzGZGmlDbN42PK4eIYZU1d021gQ 7063
snaf/dash_app/pweblogo.py sha256=QnoKO5RyVqqLh9YWbH2xAieyjOAUCsi0doT-xGlZqHA 2111
snaf/dash_app/schema.py sha256=BYyY62sr8DvA-nLVC8EQtjtQOP4vxTAIGoYvCtjiKyk 1331
snaf/deepimmuno/__init__.py sha256=F-bxO2rO4I4np6HUGVSmID5ldblXsVRnatSbf_3W6Bg 54
snaf/deepimmuno/deepimmuno.py sha256=2d3Odj-wX9fsP2FUSPlTHFH2cRAC2_eywpnxLYTGStA 7534
snaf/deepimmuno/data/after_pca.txt sha256=goBUyWq1yQp6zRLeyAdYsg8IhW6k6gG6brWAUXIyddw 6444
snaf/deepimmuno/data/hla2paratopeTable_aligned.txt sha256=5o8G2pfijfaegPWfr2oyhzUICLO3SsqThJuJZYdTCh0 3607
snaf/deepimmuno/models/cnn_model_331_3_7/.data-00000-of-00001 sha256=aoyBxTXCZH49E5F1Rbq7Oqyr3BhJHxBSLPIJZtonaUE 517339
snaf/deepimmuno/models/cnn_model_331_3_7/.index sha256=PulCg-7Dr5j0Plnr0q4STY92LVeIHiQIF1yCfjGjr3U 4870
snaf/deepimmuno/models/cnn_model_331_3_7/checkpoint sha256=unrDdXuaV73T5gOstShyjWGpR5_jkqfzQzMKrSPyLFA 59
snaf/surface/__init__.py sha256=S85X_LMUvEkqLU3deg-cXnIDiRgGX0mg53EQ7qc7zIk 189
snaf/surface/alignment.py sha256=cy-vhu1PThjkrYPfF1_omFZvPPcqIhoCcIXXKhMeY6Q 3018
snaf/surface/api.py sha256=iY80mv7OIfPWhBl7wR6Qxj6c-Oz3tbbGCtlwXbKMqNs 1427
snaf/surface/data_io.py sha256=SkIfAHtsRnWpWdz5b1GRw3UZPxe2WlXJW20J7VrGl88 2642
snaf/surface/emboss.py sha256=JGf3UDyh9q3F2bLmRdd6CEuySaZX8afoKUMw3V07Eq8 25939
snaf/surface/main.py sha256=pdRexdgYzGicwLPlbqn-n4458D-DAOjjtPKtv-vIZ6I 88248
snaf/surface/orf_check.py sha256=-INU8ayR8KlH20C30jJ6yN1LzKFeIvyE3fPEqqf3CA4 4718
snaf/surface/orf_finder.py sha256=2PBf01XpCBrXHZZj9jVBpmPz1QWvh_L-QD4AbmG06nA 4464
SNAF-0.7.0.dist-info/LICENSE sha256=VjZ3k32NIc6aWyFqF2QpRbpPVos7rZV0btVCcI1WKeQ 1076
SNAF-0.7.0.dist-info/METADATA sha256=xwm9d1lr6n81BB_HDt8N0CRtZ9voWg_qCZ4ltZ17dmk 3315
SNAF-0.7.0.dist-info/WHEEL sha256=OqRkF0eY5GHssMorFjlbTIq072vpHpF60fIQA6lS9xA 92
SNAF-0.7.0.dist-info/top_level.txt sha256=AbjKr27aFsrIX7UtxT0KDUDTWRMhDBPhwcMAkKpKpdA 48
SNAF-0.7.0.dist-info/RECORD — —

top_level.txt

snaf
snaf/dash_app
snaf/deepimmuno
snaf/surface