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SigProfilerExtractor

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1.2.0 SigProfilerExtractor-1.2.0-py3-none-any.whl

Wheel Details

Project: SigProfilerExtractor
Version: 1.2.0
Filename: SigProfilerExtractor-1.2.0-py3-none-any.whl
Download: [link]
Size: 495582
MD5: 94627c887dda40153ad2ee3d396f839d
SHA256: b003be1f946a41920bd239a1a00e38841af5dfbbefa8a7a34ec967db8de7352d
Uploaded: 2025-02-13 22:02:44 +0000

dist-info

METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt

METADATA

Metadata-Version: 2.2
Name: SigProfilerExtractor
Version: 1.2.0
Summary: Extracts mutational signatures from mutational catalogues
Author: S Mishu Ashiqul Islam
Author-Email: m0islam[at]ucsd.edu
Home-Page: https://github.com/AlexandrovLab/SigProfilerExtractor.git
License: UCSD
Requires-Python: >=3.9
Requires-Dist: scipy (>=1.6.3)
Requires-Dist: torch (>=1.8.1)
Requires-Dist: numpy (>=2.0.0)
Requires-Dist: pandas (>=2.0.0)
Requires-Dist: nimfa (>=1.1.0)
Requires-Dist: sigProfilerPlotting (>=1.4.0)
Requires-Dist: SigProfilerMatrixGenerator (>=1.3.0)
Requires-Dist: SigProfilerAssignment (>=0.2.0)
Requires-Dist: statsmodels (>=0.9.0)
Requires-Dist: scikit-learn (>=0.24.2)
Requires-Dist: psutil (>=5.6.1)
Description-Content-Type: text/markdown
Dynamic: author
Dynamic: author-email
Dynamic: description
Dynamic: description-content-type
Dynamic: home-page
Dynamic: license
Dynamic: requires-dist
Dynamic: requires-python
Dynamic: summary
License-File: LICENSE.txt
[Description omitted; length: 18034 characters]

WHEEL

Wheel-Version: 1.0
Generator: setuptools (75.8.0)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
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SigProfilerExtractor/estimate_best_solution.py sha256=8v8au34HTkFCigrvCjhKFn6DgXjtofsMNU_2C-GFfnE 3886
SigProfilerExtractor/nmf_cpu.py sha256=Q-_M2tAAf5mOIQ1wd7kGtImSoVMXsYs0qfTt0S-OSuA 10311
SigProfilerExtractor/nmf_gpu.py sha256=jE1Pe4Z_Rg5zEzTDzfZ-ldiXJPM-1T-ksJN1HCe7Jdc 10185
SigProfilerExtractor/sigpro.py sha256=nof-nvkEziIJleO1ZozRvKG_Xe91n4WoDZtDT_bPyqg 46785
SigProfilerExtractor/sigprofilerextractor_cli.py sha256=t4ues135UR9w3Vu4kJmWB7WT9s0pzeucNqiB-QKIxZQ 819
SigProfilerExtractor/subroutines.py sha256=n2-wAiKKjQvaj7pq1ofarfNNBnyk2m8qyggbbssdwf4 69073
SigProfilerExtractor/version.py sha256=sQqe56v9VO4YIcj6ie8p2ElAZ5qr3TMdkb3yFMkEnn8 191
SigProfilerExtractor/controllers/cli_controller.py sha256=HDsg45bgYnOl-hVHriNwjJs_dOkgnQRSfcjtv0D-QLQ 8927
SigProfilerExtractor/data/CNVInput/Battenberg_test.tsv sha256=C-1MFcKzgAaYofmqRdpji_Xfu-uvnmQ4lQTeZOsYsa8 885369
SigProfilerExtractor/data/CSVInput/csv_example.csv sha256=V1NZm9p1E4kj9gSqrvu1_S51aHkhVkcMMEg00f76EE8 3851
SigProfilerExtractor/data/MatObjInput/21_breast_WGS_substitutions.mat sha256=LyZbW5p39pz5yHt60QLnkD8XDGtZFNQHrN-iyn48240 3342
SigProfilerExtractor/data/ReferenceFiles/CNV_features.tsv sha256=ugZNJUNLQ5Vusct60IaWcJSUUqxu6P_D-IlJj2zqUPo 803
SigProfilerExtractor/data/ReferenceFiles/CN_classes_dictionary.txt sha256=_DXtq5eId4lGOdF8htPxzu3N-4avIWyl1AWmCzaGJOs 1641
SigProfilerExtractor/data/TextInput/Samples_CNV.txt sha256=e_yeHQh5ddiRHyMpxBgA6SkJ6VKPaj8lLQcQ_QEGxWI 12790
SigProfilerExtractor/data/TextInput/Samples_DBS.txt sha256=H9vmHBL4BWm3p1yuhaFpzLMD9kFik9CpUT-Pqo_6ox4 1469
SigProfilerExtractor/data/TextInput/Samples_ID.txt sha256=_Zsrie9ig7Ue8590h6qIO8kBCyR8DnAjh3RnX-5hvbo 2087
SigProfilerExtractor/data/TextInput/Samples_SBS.txt sha256=_NqBTgmIHNr7CDFw9MHTur8zLDCUOX4OUFsTnIf3ebw 7124
SigProfilerExtractor/data/TextInput/Samples_SV.txt sha256=dQHswBoWLMRZmYT4kiniYGfI-WbxT6h4sP1fE69olzQ 1165
SigProfilerExtractor/data/VCFInput/PD3851a.vcf sha256=cpJSgBpqHcw2VH6orknYmoVTg65hpE056iT0yaGNcpI 42134
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SigProfilerExtractor/data/VCFInput/PD3904a.vcf sha256=SekC5MjZQ1wAOVQV3kjAIjvsL5lOstDlagOMK0XU6nY 132516
SigProfilerExtractor/data/VCFInput/PD3905a.vcf sha256=vf6YH22GpRtp-NvMulpbhaHmMQzsKSnmguF2oDakP5A 108261
SigProfilerExtractor/data/VCFInput/PD3945a.vcf sha256=K1DxZEaMk0abDt-nGnx6MXVyhIFqNCg_STE5XtbdzZk 243267
SigProfilerExtractor-1.2.0.dist-info/LICENSE.txt sha256=5TJH23raqYq_6ZBV6Czri6cvYV78kcCfllA_tdKpcbI 1351
SigProfilerExtractor-1.2.0.dist-info/METADATA sha256=uEWWDVbm2hKu6tPnx7FehnA-23Hzdy9dFQpSpQ0k9sU 18969
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SigProfilerExtractor-1.2.0.dist-info/entry_points.txt sha256=JVLEVcxnwlXGvMsYREc4OwHNB74tkuAuaMsahAE-JoM 101
SigProfilerExtractor-1.2.0.dist-info/top_level.txt sha256=6PjHqV28BkOTBTczRP4pmD6ffSwZV9_NK4xqPlLdKx0 21
SigProfilerExtractor-1.2.0.dist-info/RECORD — —

top_level.txt

SigProfilerExtractor

entry_points.txt

[console_scripts]
SigProfilerExtractor = SigProfilerExtractor.sigprofilerextractor_cli:main_function