Path |
Digest |
Size |
SigProfilerAssignment/Analyzer.py |
sha256=ssIVVG60bA2lhTy4cbh1eA0QXKueLeYJyeyZ1yt05Qg
|
3740 |
SigProfilerAssignment/__init__.py |
sha256=ZRcPQNuFhRF0B2MgkOakQBbqftKYCvacjBMq0iyN5c8
|
49 |
SigProfilerAssignment/decompose_subroutines.py |
sha256=Se6k5x91Qr-_B-296FEdjSevj99dtgT6HZYMbleIpyU
|
56243 |
SigProfilerAssignment/decomposition.py |
sha256=SVfabu9W5Ac4rSW5OhIF1mYNuSu2slUvAVemeQ2BW9U
|
37863 |
SigProfilerAssignment/single_sample.py |
sha256=mHMskkO0WYKIZC8HdIq5HWKJ_762AJB9sqiq4JzJQ4c
|
35385 |
SigProfilerAssignment/version.py |
sha256=Yuk4TxaND4x1Byo2umSjmfv_B_7FidUGz5dkc5wUJik
|
191 |
SigProfilerAssignment/DecompositionPlots/PlotDecomposition.py |
sha256=Cpc8dkQqHKe-9tciCtVHBU-qNWsCNe7PD6oX8qRvKnw
|
24757 |
SigProfilerAssignment/DecompositionPlots/PlotDecomposition_CNV48.py |
sha256=JQYFmDClVEA-745fMFxUthwDqY0giFxo_ILBBRrRTiA
|
14815 |
SigProfilerAssignment/DecompositionPlots/PlotDecomposition_DBS78.py |
sha256=6nkiEpUwQaArqSPzTRIihATpc0ScHqgfthavgCUF3M4
|
14056 |
SigProfilerAssignment/DecompositionPlots/PlotDecomposition_ID83.py |
sha256=yW8ivwVzkoX5O8Z2xUwv8v0BVMvCA9UV8urXId5x-Ow
|
14287 |
SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS1536.py |
sha256=_JrM9vHscGgJpMZY2QJMXob90Vc3kqeAcSci7VqMEkw
|
14405 |
SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS288.py |
sha256=z7COUE1XNMUAMxeqOhnd6VDlB-qtH2Kob4zp6fBoC-k
|
14489 |
SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS96.py |
sha256=rUJjcGyoMJS7TrZ2DR-l0IgHw_AxEt4qJeiTF4Ry1Dw
|
14695 |
SigProfilerAssignment/DecompositionPlots/SigProfilerPlottingMatrix.py |
sha256=AUhZbEuL7Cus3Q78Bx_eRHmv1Eway_Bp-qRzKECC6hw
|
148277 |
SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Accolade_fermante.png |
sha256=4vuJU0WFFHiSS9aXdlyUrGTPt5nOt24QP5Qw3_7iTTQ
|
12535 |
SigProfilerAssignment/DecompositionPlots/ReferenceFiles/CREDIT.md |
sha256=yWZTCRsXMZoaePFOMkafDbbwCM_-TQhpE67PNjnJec4
|
165 |
SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts/Arial Bold.ttf |
sha256=1y2yH5JCrt1rkX2FSa1ZIXZrJNX40L7P2i_0xiCzwuA
|
750984 |
SigProfilerAssignment/data/21_breast_WGS_substitutions.mat |
sha256=LyZbW5p39pz5yHt60QLnkD8XDGtZFNQHrN-iyn48240
|
3342 |
SigProfilerAssignment/data/CNV_features.tsv |
sha256=ugZNJUNLQ5Vusct60IaWcJSUUqxu6P_D-IlJj2zqUPo
|
803 |
SigProfilerAssignment/data/CNV_signatures.txt |
sha256=qzv7rlCqoY4h4JIUJCuDEkTXuYi6H3VnNULB6bVPxsA
|
15995 |
SigProfilerAssignment/data/CN_classes_dictionary.txt |
sha256=_DXtq5eId4lGOdF8htPxzu3N-4avIWyl1AWmCzaGJOs
|
1641 |
SigProfilerAssignment/data/DBS_signatures_genome_builds.xlsx |
sha256=tYbOT4SIJoFcBAqg6m2u82nExep5gYjFs43AEGnxFQg
|
128402 |
SigProfilerAssignment/data/SBS_signatures_genome_builds.xlsx |
sha256=Qs-22UHtZEUCJPiciff5rhJF4Ynd1IFohlVv2xBEYB8
|
380152 |
SigProfilerAssignment/data/Samples.txt |
sha256=_NqBTgmIHNr7CDFw9MHTur8zLDCUOX4OUFsTnIf3ebw
|
7124 |
SigProfilerAssignment/data/csvexample.csv |
sha256=V1NZm9p1E4kj9gSqrvu1_S51aHkhVkcMMEg00f76EE8
|
3851 |
SigProfilerAssignment/data/sigProfiler_DBS_signatures.csv |
sha256=aKQ8PaRCzQi0Lox1Lmmo1r4Ym8imCv84mceMpTqHm08
|
8338 |
SigProfilerAssignment/data/sigProfiler_ID_signatures.csv |
sha256=iUvZItTczlph9dtLEye9qW0Gyxd4hrH_Nl9x0AWQXDA
|
16970 |
SigProfilerAssignment/data/sigProfiler_SBS_signatures_2018_03_28.csv |
sha256=eSM5DVOplm3kWyG_7MOviXfnsFSESVMbA4aoUgPhmWc
|
57422 |
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37.txt |
sha256=nERd7hWydVDvIJp8h109TE8fZ7d1UKIyCRXAsN4GlgY
|
14328 |
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37_exome.txt |
sha256=VVSLnfe_1EfY5YcCUCc1UR_Rn6ewGHEE7Hjr1zZOSTA
|
39321 |
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37.txt |
sha256=b4ZJgOCh7_G51PBMO5mkv92Uq9-ZTrj3fuMNalFJfkk
|
36586 |
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37_exome.txt |
sha256=xTKvDUhyktMbsQdIY_jbODKjcMKXrSvzCUatoX8_Ego
|
53285 |
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37.txt |
sha256=Y_REeD5brW5sjkckWKeuVKE6KDph4uoos33kKosmMDY
|
17758 |
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37_exome.txt |
sha256=paoNv_Uz9EMHMtMMBFNQ__P0Wq6UkrmIu1WFrVzlsdo
|
17842 |
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_ID_GRCh37.txt |
sha256=dVpbvi1FqAJD4ilLWrasaHLPkKOEcuakmXaIlQbwbxM
|
29489 |
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37.txt |
sha256=o7G26784EVxVXDLyUvrISTnQDTHTgaqxwBtrbOIHMMQ
|
137506 |
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37_exome.txt |
sha256=MXPm9YnP4CRW8pAJO65vKHMBip7DsvGIHMXtzCQEuhg
|
138652 |
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37.txt |
sha256=Y_REeD5brW5sjkckWKeuVKE6KDph4uoos33kKosmMDY
|
17758 |
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37_exome.txt |
sha256=paoNv_Uz9EMHMtMMBFNQ__P0Wq6UkrmIu1WFrVzlsdo
|
17842 |
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_ID_GRCh37.txt |
sha256=dVpbvi1FqAJD4ilLWrasaHLPkKOEcuakmXaIlQbwbxM
|
29489 |
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS288_GRCh37.txt |
sha256=n1a52HnFQuL-pD-uw3DjvJxj-pZzzsLOWZOtK26e9WI
|
109467 |
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37.txt |
sha256=4SZwzA197XP0i75R_GKgTXTKjYbr6aM3isfy9vDMHVk
|
148966 |
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37_exome.txt |
sha256=YFhSQ3kFPtmd9lc4sVAFm461g3G0JASFeVbu6z7l0WU
|
150133 |
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_CN_GRCh37.txt |
sha256=EDsK14KdDK1vsBoYBCuyFymXZ4Q4OJ87Z_gm5eACBx0
|
18940 |
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37.txt |
sha256=iPeEB0o6AIGA8TrQj8DsxfIrXNPuzXsUiccfGwSz6qM
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17759 |
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37_exome.txt |
sha256=5EJJwVf9S8Xgidz6rnHF2ItCl54l4ugVn4aaFnsr6aI
|
17844 |
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_ID_GRCh37.txt |
sha256=o0VhcguYci5e46OJiohVDcwfUbKTZRpZ6Q4yvd7sRpE
|
29808 |
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37.txt |
sha256=nZwhLMFKpmDaG3_Z5g5pbI4siFp2BsJ9IK2Jl5VFVOo
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151235 |
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37_exome.txt |
sha256=d15fQ2AufvCX6oI5cDMNCf7GQAt4FzTgoZODzNi1Mfc
|
153270 |
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37.txt |
sha256=awuI2mRPBkF8vdkdF08wMU85nYdM9PiXtEdFVkyzj8M
|
17757 |
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37_exome.txt |
sha256=e98w5QEIKBgraDvTWH0-CsHl0Gd_t9Ze1laValTteLY
|
17857 |
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_ID_GRCh37.txt |
sha256=-wxzVEccuYlZx9EnW6LpPnteHtOW9lvdN1uDZrAQ7io
|
28686 |
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37.txt |
sha256=RTsIGT1U6xiRZwoqUq3gibmn9UqfC5mZG3oWON_OJYA
|
128501 |
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37_exome.txt |
sha256=b0OGzG0_3HwEbnLV3zg5o-LOgUMkg0nTws3e9CBwhP4
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129752 |
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38.txt |
sha256=kUhq4qVBb6RK-GSxw6ASGm7qLR1CO6kNtEL9My9gsFs
|
39244 |
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38_exome.txt |
sha256=4W9Bhj9VzPLs0q-5cz5aP5AF-PvlWq8e5RAw4xmlOvo
|
39286 |
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38.txt |
sha256=5rNuUjM4MC7uqp7Blp8x7EZCMaXG2Zq5cNXPKlEs4Tg
|
53205 |
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38_exome.txt |
sha256=WBBBvM1q4PQN5szZPfpBMyrzGNf35r6vHlbFZQy18R8
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53265 |
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38.txt |
sha256=4lxxnsLLcgzvasGaNlmwAztGBtYjCECmo3Cs5413Bd0
|
17833 |
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38_exome.txt |
sha256=42brvY1OWdRJZo1X6BHk1KE5wNEFapZ1TOvF_kleZUw
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17826 |
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38.txt |
sha256=LDpM8OveiuKhY9SkGWwJf6di0vts6DMO5MRivHGziKM
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138534 |
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38_exome.txt |
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138665 |
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38.txt |
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17833 |
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38_exome.txt |
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17826 |
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38.txt |
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150027 |
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38_exome.txt |
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150132 |
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38.txt |
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17825 |
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38_exome.txt |
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17827 |
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38.txt |
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153188 |
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38_exome.txt |
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153263 |
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38.txt |
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17829 |
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38_exome.txt |
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17838 |
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38.txt |
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129685 |
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38_exome.txt |
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129793 |
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10.txt |
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39213 |
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10_exome.txt |
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39299 |
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10.txt |
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53208 |
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10_exome.txt |
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53279 |
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10.txt |
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17834 |
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10_exome.txt |
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17816 |
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10.txt |
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138625 |
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10_exome.txt |
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138642 |
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10.txt |
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17834 |
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10_exome.txt |
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17816 |
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10.txt |
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SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10_exome.txt |
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150127 |
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10.txt |
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17836 |
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10_exome.txt |
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17819 |
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10.txt |
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153243 |
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10_exome.txt |
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153267 |
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10.txt |
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17836 |
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10_exome.txt |
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17818 |
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10.txt |
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SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10_exome.txt |
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129754 |
SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9.txt |
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SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9_exome.txt |
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SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9.txt |
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53199 |
SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9_exome.txt |
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53293 |
SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9.txt |
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17839 |
SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9_exome.txt |
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17843 |
SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9.txt |
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SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9_exome.txt |
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138590 |
SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9.txt |
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17839 |
SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9_exome.txt |
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