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signatureanalyzer

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0.0.8 signatureanalyzer-0.0.8-py3-none-any.whl

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Project: signatureanalyzer
Version: 0.0.8
Filename: signatureanalyzer-0.0.8-py3-none-any.whl
Download: [link]
Size: 184003
MD5: 10da18db89492a9f48c0d787bf207d1a
SHA256: 9992079260c223b6942a922afe7e45492141dcc5adcc4d2a0ccc296a6c2a7464
Uploaded: 2024-05-13 02:50:34 +0000

dist-info

METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt

METADATA

Metadata-Version: 2.1
Name: signatureanalyzer
Version: 0.0.8
Summary: Bayesian NMF methods for mutational signature analysis & transcriptomic profiling on GPUs (Getz Lab).
Author: Shankara Anand & Justin Cha - Broad Institute - Cancer Genome Computational Analysis
Author-Email: sanand[at]broadinstitute.org
Home-Page: https://github.com/broadinstitute/getzlab-SignatureAnalyzer
License: MIT
Classifier: Development Status :: 3 - Alpha
Classifier: Programming Language :: Python :: 3
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Scientific/Engineering :: Interface Engine/Protocol Translator
Requires-Dist: gprofiler
Requires-Dist: h5py (>=2.9.0)
Requires-Dist: matplotlib
Requires-Dist: numpy (<1.24.0)
Requires-Dist: pandas (>=0.25.0)
Requires-Dist: pyarrow (>=0.14.1)
Requires-Dist: scikit-image (>=0.15.0)
Requires-Dist: scikit-learn (>=0.21.3)
Requires-Dist: scipy
Requires-Dist: seaborn (>=0.9.0)
Requires-Dist: tables (>=3.6.1)
Requires-Dist: torch (>=1.2.0)
Requires-Dist: tqdm (>=4.33.0)
Requires-Dist: twobitreader (>=3.1.7)
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 4490 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.38.4)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
signatureanalyzer/__init__.py sha256=4kzVSthNg6lK_svofy4sSj8wgucxbGhG40_MjKe1Jxg 389
signatureanalyzer/__main__.py sha256=YIYtv2Z-RXV7DeBJIdsQg_1m3nfRbC2CRabiT7iviBo 6880
signatureanalyzer/bnmf.py sha256=NLi5DUBwMw9kUv9Ll8fXrAOTIX9lv2jcmqwvup_S48s 5048
signatureanalyzer/consensus.py sha256=5OeS5faXzWxeoTohEr5tM_tx3CHsXWHBnW1idJyX6os 1187
signatureanalyzer/context.py sha256=rlWT7u5klZ-fhkWk6aPZuoaPS3RQ51PPebYNnxFT7qY 12204
signatureanalyzer/signatureanalyzer.py sha256=Z5X-5sPVT-vqAiqPwUk2sa8866lzjeUIfs8GbYJ5D7E 17305
signatureanalyzer/spectra.py sha256=KVcqxS3ES3XLQE5RBQd43r7q5YMvW8VptXxe4dq5ex0 14446
signatureanalyzer/supervised_bnmf.py sha256=6v-il3jVdM0JqE8KtveQkPUTpfPY4w1sejlpqiieQRI 12055
signatureanalyzer/utils.py sha256=w0NZ7GrdyQBEuNfDphyz3SxbkBhpckdUp1vzMnvPkDc 37040
signatureanalyzer/pathways/__init__.py sha256=76Mwme2WWDh4x0T1_Ho18tRNou459e8BYXkxlqq54fE 66
signatureanalyzer/pathways/_gsea.py sha256=xiZQjZr1aRK8E6ywmHTBx1jEZyG_kEGzQTx3lEq_RRY 5674
signatureanalyzer/plotting/__init__.py sha256=zKlsI_OLha5BjMDJysAvBfnYkF5mWYTFkz0XrYgOMhY 557
signatureanalyzer/plotting/_cosine.py sha256=VgymeFRBik1YgJ2cyeN5AfwvqptIHsxeZ6qSFKsDckg 1464
signatureanalyzer/plotting/_muts.py sha256=Qs7AKqN-SwSEFWbs2yrweroqtZqgRONNEPKwfhZz-b8 38234
signatureanalyzer/plotting/_nmf.py sha256=iJ5YbYei7SfV-evAfxoQeCkAbxifZCJQ1rMtVy9UlOA 7514
signatureanalyzer/plotting/_rna.py sha256=8_rJIc3QPIWP_0Bdoe6VNyfGiAZEOmhM7-wX5exJN_8 7523
signatureanalyzer/plotting/_utils.py sha256=ofy1KBFQllv7OLsvYtig5ZQkipFpbEYpbo4JgUrVtG8 2312
signatureanalyzer/ref/cosmic_v2/sa_cosmic2.tsv sha256=I5f19__4B-CdGVt4519FEz7Vo6_lqPEbGoSGgbRuDrA 36385
signatureanalyzer/ref/cosmic_v3/sa_cosmic3_dbs.tsv sha256=18zTDuB-m7hoE2t0HgawZf4gYwFc52ztaNBfyb_ZiIk 9695
signatureanalyzer/ref/cosmic_v3/sa_cosmic3_id.tsv sha256=I7m_6HQpUaasBC0v-HJCIpSKP3y2y5Fi2gkJttDyY3E 23307
signatureanalyzer/ref/cosmic_v3/sa_cosmic3_sbs.tsv sha256=WU8pw3SfPyT7mDJBaYDkV1sDEVvqYUV9bKbRS0Zl81c 74211
signatureanalyzer/ref/cosmic_v3/sa_cosmic3_sbs_exome.tsv sha256=zV-La_28iNEtw1I3wMLFwBiWKH_896zQEtZ3vXPBmEI 90771
signatureanalyzer/ref/cosmic_v3/sa_cosmic3_sbs_t.tsv sha256=Oa4JcUpuV17mjubtTBQjRhnVbqoW2SEEAlJTjtS5JPo 180467
signatureanalyzer-0.0.8.dist-info/LICENSE sha256=72ekOJicG5eCFSBER22KQS-ExwZROf7Jc9Hq5OAnAoo 1072
signatureanalyzer-0.0.8.dist-info/METADATA sha256=N9Q_9xN1GyrC4e_L_RR8_MZqtKUAYnnd3j4267m4150 5677
signatureanalyzer-0.0.8.dist-info/WHEEL sha256=2wepM1nk4DS4eFpYrW1TTqPcoGNfHhhO_i5m4cOimbo 92
signatureanalyzer-0.0.8.dist-info/entry_points.txt sha256=MHPRzJqdB8hEnEZbHK2t1la0NRSYytjH7ropsti_AQ4 70
signatureanalyzer-0.0.8.dist-info/top_level.txt sha256=2qqKo7YCY-uQYzuumzPcatzRzRQWdeVVp11MVt7PCRc 18
signatureanalyzer-0.0.8.dist-info/RECORD — —

top_level.txt

signatureanalyzer

entry_points.txt

[console_scripts]
signatureanalyzer = signatureanalyzer.__main__:main