Wheelodex » Projects » seqnado

seqnado

View on PyPI — Reverse Dependencies (0)

0.5.4 seqnado-0.5.4-py3-none-any.whl

Wheel Details

Project: seqnado
Version: 0.5.4
Filename: seqnado-0.5.4-py3-none-any.whl
Download: [link]
Size: 72024
MD5: a3a037c6922f3828905dbc1833596664
SHA256: fd3864e62f3e9038eac617fdce1918a4bbc6eafef5f8614cc2939b0ec476f456
Uploaded: 2024-08-02 14:10:53 +0000

dist-info

METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt

METADATA

Metadata-Version: 2.1
Name: seqnado
Version: 0.5.4
Summary: Pipelines for genomics analysis
Author-Email: Alastair Smith <alastair.smith[at]ndcls.ox.ac.uk>, Catherine Chahrour <catherine.chahrour[at]msdtc.ox.ac.uk>
Project-Url: Homepage, https://github.com/alsmith151/seqnado
License: GNU GENERAL PUBLIC LICENSE Version 3
Requires-Python: >=3.10
Requires-Dist: click
Requires-Dist: cookiecutter
Requires-Dist: pandas
Requires-Dist: pandera
Requires-Dist: pulp (<=2.7.0)
Requires-Dist: pydantic
Requires-Dist: pyranges
Requires-Dist: pyyaml
Requires-Dist: seaborn
Requires-Dist: setuptools-scm
Requires-Dist: snakemake-wrapper-utils
Requires-Dist: snakemake (<9,>8)
Requires-Dist: snakemake-executor-plugin-slurm
Requires-Dist: tracknado
Requires-Dist: wget
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 316 characters]

WHEEL

Wheel-Version: 1.0
Generator: setuptools (72.1.0)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
seqnado/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
seqnado/_version.py sha256=Qmcdl-R9NZbIQJB07meh1xYZtBIavIjcKZ__GbCBEFs 411
seqnado/cli.py sha256=c0zCb1VOVN5G0h2k-y-2UEah-KGNoFLBdeRJO8D5ZYU 6027
seqnado/config.py sha256=NywYu9fUExVKrNZ79V1qBqwhk6tx7K-TP9TShyUoQm4 12193
seqnado/design.py sha256=8n_2DwxemtVyp5rV92gh0eZZx6koVWmE2kqGQWRJ_eg 41749
seqnado/helpers.py sha256=MP3ufUcNbRdhyF2kyMs2ZIbsUMCfvtci9V8ZclmdXKo 8744
seqnado/data/logo.txt sha256=1Ziyuz4zPrFvrJallMWuqFZMOLLn7yek-wCDUk8drmQ 2168
seqnado/workflow/snakefile_atac sha256=72paj-YXO1LkpknMQQJHmOUS2G-YTqmbxca5H0vqt6M 2251
seqnado/workflow/snakefile_build_index sha256=IOBYX4kmzYfyar8ivFjycfKtSWUKUjsADSpAIp_6tqc 116
seqnado/workflow/snakefile_chip sha256=aiCbboO9qlUMOv1dbrNYM1uhCpTs_IZWw36EFwTEPmo 2844
seqnado/workflow/snakefile_rna sha256=KUwIGlbjTozq1HbV2OpWauHX_Gx0jYI3Q4_h7zcLNNo 2567
seqnado/workflow/snakefile_snp sha256=Xew7AxNDNFMZis6rxJappW1oc_-yyTTGwWQ98-ziFYw 2040
seqnado/workflow/config/config.yaml.jinja sha256=JjoWEe30lMc8HRvoy3Wk2NqqaTybOIC7XBZXAOrt6EQ 1638
seqnado/workflow/config/deseq2.qmd.jinja sha256=B6Y_PfRKC8ntYgttcprpRdevVjDEw8jXcN_mfonfVeU 16307
seqnado/workflow/config/preset_genomes.json sha256=cL_jmzirs9liZjW7sLBBY31EJegoqiNXyY5ihabvJP0 4282
seqnado/workflow/envs/environment.yml sha256=BhiuTvk2ZaY83h-nuF-BTiKmx8IcOg7SSEZrhulbruI 556
seqnado/workflow/envs/profiles/profile_singularity/config.yaml sha256=bYB1q9Uw-IkeSJW08l9ajQv7PG5FCaFmP3d052iIi9w 240
seqnado/workflow/envs/profiles/profile_slurm_singularity/config.yaml sha256=yt0_MS1EpkGe9QzYkYnxXSnmj14biVirLZiciYCAlfc 438
seqnado/workflow/envs/profiles/profile_test/config.v8+.yaml sha256=BA_9g_I2A6PXATScUx3aBXot5fM9EnvKIfsvMZdii-s 314
seqnado/workflow/rules/align.smk sha256=UOK8hAG6TJ6Rtqdzpc08dAE_q1okuEyH623GrptRxlo 2080
seqnado/workflow/rules/align_rna.smk sha256=lwI20H9qJ1TXVNv8fAg1liWl0DxAajUY4JlmG47NubM 1534
seqnado/workflow/rules/alignment_counts.smk sha256=pTu-ZxXxhmulMMLzOCPL1ZJZ-DjE1wLhUrUHSJE7g5s 3520
seqnado/workflow/rules/alignment_post_processing.smk sha256=Jz33LxWzDB26Ob_99Qr3eGLFyB1DCwgNdgmTQcbjaxQ 8817
seqnado/workflow/rules/common.smk sha256=t6DWND1nOB7nExQ2bawdMyprJ6rhRVEXDPgwUHTD36M 184
seqnado/workflow/rules/custom_genome.smk sha256=xd2cxqmpdjt1BZQroHcawWkpK2V4DV6PJnk8i9RiFr8 1794
seqnado/workflow/rules/deseq2_rna.smk sha256=Wn7M78U6ABp3-MKpv8Nio4C-jH6VvlyMv9PppY32vaU 1558
seqnado/workflow/rules/exogenous_norm.smk sha256=GM1gRM4iGt8hbJ2o_9q6hh_NAyzfZd1HRaEVhJINobs 4840
seqnado/workflow/rules/fastq_screen.smk sha256=hdvWAoRLBQNBYd0NTk6pd-mppKDZOzFfKabte31HT_M 2611
seqnado/workflow/rules/fastq_trim.smk sha256=oiBbPrYTFSRIYAzXBTcy-a8a1jsTLmbccHyKZKr9rHg 2213
seqnado/workflow/rules/heatmap.smk sha256=2gPFztTp70qCHnvjwqCHwQHl-qFc_5nc43ct6xK1zFI 2208
seqnado/workflow/rules/hub.smk sha256=RQv2xYn-UewT6M1T17UUM_jIRN9b6MBd8_ZLRhsCDi4 3258
seqnado/workflow/rules/motif.smk sha256=mDqCyu6AHuYNhIBJRQ-JnUji_FvC-u6Sg1g3JJxbSg0 2060
seqnado/workflow/rules/peak_call_chip.smk sha256=RucZHOD7Vsji3cZ1RY06Pi5Yjs5nyXSbNAce9dtCQpA 9097
seqnado/workflow/rules/peak_call_grouped.smk sha256=etxfG8PX8exPdzZhI_L_qePLvSTVv4McyrlnnUSwbJo 1069
seqnado/workflow/rules/peak_call_other.smk sha256=mWE1A5_CV6Du0JqmJcYPC27NsSKFEYCqBDJdQAAnhSU 3048
seqnado/workflow/rules/pileup_default.smk sha256=st5Vdn2jXGeEuPe2mdDIjVN2MAmsZ70_idHXO46njcw 6728
seqnado/workflow/rules/pileup_grouped.smk sha256=y5lYS9WtLiyYivCOx7lSxzsTAoKxVLIgkflQQJBTweY 1166
seqnado/workflow/rules/pileup_norm.smk sha256=CpD1o2tLuDlseQ_OxA7x1E5LjFShvlc9oPnpE7Bd03M 8066
seqnado/workflow/rules/qc.smk sha256=3wJ6dDWOW9kE7mJ4H1FxyPEI6hKnz7iH8KPnOFHQtL4 8942
seqnado/workflow/rules/variant.smk sha256=TBlZmgc9k-xEEtFjZqUjdP19cMp6tAgX36FmNr7d91c 2924
seqnado/workflow/scripts/calculate_scaling_factors.R sha256=5eO5IXbJ2b3pmIx22_PJv2t267XO2uEB6AcMjiwSTT8 409
seqnado/workflow/scripts/calculate_spikein_norm_factors.py sha256=U2yyQtg19QssH_mlRRWg6tBt_b70AXLclhO3nCNzjmg 2309
seqnado/workflow/scripts/calculate_spikein_norm_factors_rna.R sha256=vVUaKZnUlRkeQAHXgGPdyyiD073VBy8nInCdWlcNACU 1067
seqnado/workflow/scripts/calculate_spikein_norm_orlando.py sha256=jgzCoH2V2xNEL6U4FKqfR00l7g81RaqnVkkFbQNIzYc 1330
seqnado/workflow/scripts/create_hub.py sha256=AW4Om78Gz6k6-PnVQwvNGxBUQ3Lm3ijMz1LUO8rkPrA 2171
seqnado/workflow/scripts/get_salmon_counts.py sha256=R_4STTIqNLVoP34XPf_THN9HCFaWzZgsbCG7H_NSKzo 931
seqnado/workflow/scripts/remove_blacklist.py sha256=72VINE0zG_VX6Y8af5cMSOTLQblgJz79JxtAlWMCzjk 708
seqnado/workflow/scripts/remove_duplicates.py sha256=Ol4dy1Nh2c7UUTdA8I_wLU4M2enhJeNG73wekK5ofpc 1020
seqnado/workflow/scripts/shift_alignments.py sha256=7G-4QDL6GcpGqD6E08XxOTk8E8K3AoKgS0Z6qmDTpGs 830
seqnado-0.5.4.dist-info/LICENSE sha256=YF6QR6Vjxcg5b_sYIyqkME7FZYau5TfEUGTG-0JeRK0 35129
seqnado-0.5.4.dist-info/METADATA sha256=HW-9-gnzV36JEX_6Gr5FxAiAN4mSEldAA0oLavj7LvQ 1126
seqnado-0.5.4.dist-info/WHEEL sha256=R0nc6qTxuoLk7ShA2_Y-UWkN8ZdfDBG2B6Eqpz2WXbs 91
seqnado-0.5.4.dist-info/entry_points.txt sha256=7HITo8Vk3i3qx968VG62C3meP7XZfmcdXEYYFiigfBs 133
seqnado-0.5.4.dist-info/top_level.txt sha256=H4PMBPuOo-zXIJVsHRXgnaNEu8Pnf91xqZ3diHsBhpk 8
seqnado-0.5.4.dist-info/RECORD — —

top_level.txt

seqnado

entry_points.txt

[console_scripts]
seqnado = seqnado.cli:cli_pipeline
seqnado-config = seqnado.cli:cli_config
seqnado-design = seqnado.cli:cli_design