Reverse Dependencies of scvelo

The following projects have a declared dependency on scvelo:

• besca — Collection of BEDA internal python functions for analysing single cell RNAseq data.
• cellmap — CellMap - RNA landscape inference method
• cellograph — cellograph
• cellpath — CellPath, multiple trajectories inference in single cell RNA-Seq data from RNA velocity
• cellrank — CellRank: dynamics from multi-view single-cell data
• cytopath — Simulation based inference of differentiation trajectories from RNA velocity fields.
• deepvelo — Deep Velocity
• dklfm — no summary
• entrain — A single-cell analysis package to elucidate environmental factors controlling cell differentiation in RNA velocity and spatial datasets.
• entrain-spatial — A single-cell analysis package to elucidate environmental factors controlling cell differentiation in spatial datasets.
• exdyn — Analyze cell state dynamics dependent on extrinsic factors
• ImputeHiFI — no summary
• mazebox — A suite of tools for analyzing single-cell transcriptomics data
• multivelo — Multi-omic extension of single-cell RNA velocity
• ngs-toolkit — A toolkit for NGS analysis with Python.
• psite-recommender — RS for Proteomics
• pyrovelocity — A multivariate RNA Velocity model to estimate future cell states with uncertainty using probabilistic modeling with pyro.
• scab — Single cell analysis of B cells
• scape-sc — Single-Cell data Analysis via Perturbation Estimation
• scpy4reactome — python service for single cell analysis in Reactome
• sdevelo — SDEvelo: multivariate stochastic modeling for transcriptional dynamics with cell-specific latent time
• spider-st — Identifying spatially variable interactions
• spiderYa — Identifying spatially variable interactions
• tivelo — single cell velocity analysis
• topicvelo — TopicVelo: Dissection and Integration of Bursty Transcriptional Dynamics for Complex Systems
• topovelo — topological velocity inference from single-cell spatial transcriptomic data
• unitvelo — Temporally unified RNA velocity inference
• velodyn — Dynamical systems approaches for RNA velocity analysis
• velovae — Bayesian Inference of RNA Velocity
• VeloVGI — Graph Variational Autoencoder for scRNA-seq velocity
• velovi — Estimation of RNA velocity with variational inference.
• vicdyf — Estimate cell state dynamics with fluctuation