Reverse Dependencies of screed
The following projects have a declared dependency on screed:
- barseq — Analysis of barseq data.
- CMash — Fast and accurate set similarity estimation via containment min hash (for genomic datasets).
- fastq-and-furious — Fast handling of FASTQ files
- ope — Abstracts away running gnu-parallel on tools with FASTA input and provides parsers for some common formats produced by said tools.
- panqc — Package & software for analysis of nucleotide redundancy within CDS-based pan-genome analyses
- pyinseq — Analysis of transposon insertion sequencing (INSeq) data in Python
- pypresident — PaiRwisE Sequence IDENtiTy. Calculate pairwise nucleotide identitywith respect to a reference sequence.
- radsim — RADsim: simulate reduced-represention sequencing platforms based on restriction digestion, including RADseq and GBS.
- sourmash — tools for comparing biological sequences with k-mer sketches
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