Path |
Digest |
Size |
config/base.yml |
sha256=U-UMzdVoInLhNUbeHwHJ2qoPpAHsd-8Dxe7bhRQAwMU
|
3011 |
config/predict.yml |
sha256=_vdwp7Zyq98EP3GW0eXQrP4FRdtdwRPc9TuVKSngXL8
|
471 |
config/pretrain_large.yml |
sha256=NQ9snmQGPWt9RmFjY8muyJrqmDSHb8kW16vrcYL0358
|
158 |
config/pretrain_medium.yml |
sha256=hpg8FAaDgZxr2p_ZcCZfgKo3O8RkmNUeAn69UEUXz78
|
129 |
config/pretrain_small.yml |
sha256=SIpxSDD-IyIYGh_IRxEJkOZ_GiK0UDcOndtYexdw1yo
|
129 |
config/pretrain_vlarge.yml |
sha256=0YnOHmIPPiclk-ZT6jx6kJzTqyqgExNw_gLLfrgaWMc
|
348 |
config/pretrain_xlarge.yml |
sha256=U67o0auofsTYU8gZY8R5Xybj91UC-vi6PGcSM3q-qr0
|
1117 |
config/scgpt.yml |
sha256=5C6q7-9_sWjzj3YyL4GApIg3JDlg4_gBg2j8PpTMbrA
|
3644 |
config/others/pretrain_MLM.yml |
sha256=yUJ9SLFBu41zBEjGtxNVbvAV2NbOBufbsYkSYyjIdEA
|
3634 |
config/others/pretrain_denoise.yml |
sha256=awtWmtQK-FWb04XaeMuzukLp_JRM8Hc3wIP6e9JXBfw
|
3632 |
config/others/pretrain_mvc.yml |
sha256=Bhhhx3ASxdI5qQi5XIzAowZO_mKd64YCdi7YNgcYAY8
|
3644 |
config/others/pretrain_onlydenoise.yml |
sha256=LQrG4edud2PoVVF4WXWNEo9jltYqzFu2G5BDYLl0GOA
|
3499 |
config/others/pretrain_small_2000.yml |
sha256=CbOv9qV6InnRa232Za6QtrrplEqjmpPOsHP8rKNaYDc
|
3789 |
config/others/pretrain_small_all.yml |
sha256=IpV1IgnzioGTew5edHupQcutMe6gwh4l-sq3DrUkkFE
|
3714 |
config/others/pretrain_small_noClass.yml |
sha256=KMBLpMeQZecdR23DySoO_7xY6g2JP_G7j3PrwCc9Lv8
|
3720 |
config/others/pretrain_small_onlyDNS.yml |
sha256=yWitLPB1oMsYEbi1O-DtZ0eJiMYzYgGEVgVu-cIPDCc
|
1346 |
config/others/pretrain_small_onlyMLM.yml |
sha256=QBoUJHekjN1tdixc-hS-HgbZVYwZZHeKGqPeMOZThQ8
|
3707 |
scprint/VERSION |
sha256=otXiaP5wl5yszYlRVrPTO9YaPMfmYKt6WwcGaEmz4kg
|
6 |
scprint/__init__.py |
sha256=egtmPkPppDarzBx6Ia0ipflZnngm9g0th1osVYqQ0_E
|
306 |
scprint/__main__.py |
sha256=0qokyKzNVzWNOb2SMLvI5SI6xksIVuI2yzNZdB1OqlA
|
1571 |
scprint/base.py |
sha256=NRyrF3s_w5xNNs6uCV9MYHH8CPbUE8RVLNPIaMdskjY
|
323 |
scprint/cli.py |
sha256=7lXqbBaadiniCXKM76Ud4mx7QrUI5WIUHCibTKGAFxM
|
10555 |
scprint/explainer/__init__.py |
sha256=du4tEGvkbiMlQ_WezLUG5wtwl7l3DIZxBg_pzO1zX1U
|
51 |
scprint/model/__init__.py |
sha256=4RxYx0PdMSXwqF7ricAmZwa0cWsQcA65ntHxjRnLI-g
|
21 |
scprint/model/decoders.py |
sha256=ZWHHdeyiAcz9UTWD6r-HfL5pbJW8Kd7T6YrpPSGqt0I
|
8318 |
scprint/model/encoders.py |
sha256=Zbj3sXgU7VTY2ECtJGsjPX601jWPcouT8OKEFjOmJAA
|
8739 |
scprint/model/loss.py |
sha256=WivaLAOHVmhBk8ade8KHwwvvwmNqKybnwakUT3VZfa4
|
11884 |
scprint/model/model.py |
sha256=tXkcO6NrQzdXs1EhoR8CG7ZwOJPnOIdumL4DSoMW6TM
|
57682 |
scprint/model/utils.py |
sha256=jjZE6Tnk8KwhED8W-rFKS8OClDbNGHJgJCGtSxyCnto
|
29977 |
scprint/model/flash_attn/__init__.py |
sha256=DYngA2nAXWeOmT_kkSDJNBDTzOhKLzMhUOXDAWQvDQs
|
86 |
scprint/model/flash_attn/activations.py |
sha256=0Dvq8PfT39IVlD2XudmS4VcJ8IWUuyLfbknOh6JEQp0
|
3937 |
scprint/model/flash_attn/block.py |
sha256=lYFMJLhPNwGr1p1OaPdT2Mz-2ByP-vMQl7Ydjk6PDVk
|
15550 |
scprint/model/flash_attn/flashattention.py |
sha256=j2c9gJkJqWqe4TdQ_91vPYHEUszjUpTeblIykPLqokQ
|
49572 |
scprint/model/flash_attn/flashformer.py |
sha256=ZIdHcsc0UKQEGg0QRlQP_EOuGP5JhjY0qkuu6ag5qrg
|
8885 |
scprint/model/flash_attn/layer_norm.py |
sha256=l9BzP8NGXgWTbq4LPmS6geGxKjOCWxCv66j6RRM65Go
|
38648 |
scprint/model/flash_attn/mha.py |
sha256=pNWtk7rLIVmBXvDaMW4VCTeeWPdUHHKvUuZJahIm7Ew
|
32055 |
scprint/model/flash_attn/mlp.py |
sha256=p99To2zhwVJAD0XKOaaL_cVSWs4BJZAEyz94grLFm-o
|
2852 |
scprint/tasks/__init__.py |
sha256=Tvma5_bljxot3TkJcO7aBhxFidQWEPfZayf_fqU7Zr4
|
66 |
scprint/tasks/cell_emb.py |
sha256=mLnW1mcBtUACz2FsAqjufm_qwIGvrJlrHqBfGyvPolQ
|
22533 |
scprint/tasks/denoise.py |
sha256=q5nXpcL4hnCMbMEIItZBFcgmJzYe5uqUdPexEG7-8Lc
|
13698 |
scprint/tasks/grn.py |
sha256=sUfz1UWR1rGUJHqpAAtXM9EhwiqkMYvG5Oz7Pi6Tf1I
|
31357 |
scprint/tasks/knn_smooth.py |
sha256=1STNuKem8vdtWedxk0OR2cINi8zWnEwxc9pMyMfnq_8
|
10408 |
scprint/tasks/tmfg.py |
sha256=Vgl8dkZVyHf3upu-LYf3BSHDqkPRZ2nbsFA7qQyVqX8
|
4064 |
scprint/tokenizers/__init__.py |
sha256=6ofva0ZdgNzybLVxcg0RYkfi_h41JjXzXZ4I4YL00Hw
|
128 |
scprint/tokenizers/embedder.py |
sha256=BdlHIe334aRYzv9272THblpLoRLHd9Dols2uESTbk5M
|
3238 |
scprint/tokenizers/protein_embedder.py |
sha256=4wm-rpqI5ZCYWaBZenGgX_zNQovIXxPEDAEYM4H0xL8
|
2729 |
scprint/trainer/__init__.py |
sha256=nOu2MUtdfpmSWWc7l-Gk5v9gS5JKzsicArMl8038IsU
|
23 |
scprint/trainer/trainer.py |
sha256=XZzlzgGyIlly8-nb_Mhnu5HkQZVmQApD_v0-rszuoXU
|
8112 |
scprint/utils/__init__.py |
sha256=D6HN4Q6NJ0YUMGFUdJpLl5YJDKA7Ge51x3pX0WUISbw
|
83 |
scprint/utils/default_census_vocab.json |
sha256=n-c88pkptcZqX__Psry90-OKOghoSM0S-PkYvPRY118
|
1317585 |
scprint/utils/get_seq.py |
sha256=-usONgOIKjW97SuKziBRhy1ZMLF1kxuqUFQc0dVAJKY
|
21569 |
scprint/utils/sinkhorn.py |
sha256=xY0ZeLVEPQAR9PWWktLY_1zwQHtOPjlbIUEaQ8jGHWU
|
3309 |
scprint/utils/utils.py |
sha256=7QyC8kkLuPeqHcFlOEGxlY5VOQVeEqNzEvzf8oK1Q_8
|
5943 |
slurm/submit_large.sh |
sha256=WkxArnxd0xgZqV7c6IzZFj_HWe1SlmgQm4QDb8bNjls
|
804 |
slurm/submit_medium.sh |
sha256=tEG9Pzk0fpFOi7_T-lxuGACpzVFkNz4g7R0xpjEr9Zs
|
858 |
scprint-1.6.2.dist-info/METADATA |
sha256=5-9qxkVUfYsqwCwIqB0po-gdVcVpoHrXwsniqwPNXAY
|
18325 |
scprint-1.6.2.dist-info/WHEEL |
sha256=C2FUgwZgiLbznR-k0b_5k3Ai_1aASOXDss3lzCUsUug
|
87 |
scprint-1.6.2.dist-info/entry_points.txt |
sha256=MlwZHTfZ4LQ4JvJFobTYGMrv3uCY9xW3Eour8rLvVE4
|
50 |
scprint-1.6.2.dist-info/licenses/LICENSE |
sha256=qAl_x9jZlynu1XSNctMbF1KRCc50-XfHrD9i25BHVcQ
|
1104 |
scprint-1.6.2.dist-info/RECORD |
— |
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