Path |
Digest |
Size |
scirpy/__init__.py |
sha256=Tqb0cfJ0qaICi0kX4lnm_0DtPR9Vo8BUc5J16VYNdyY
|
206 |
scirpy/datasets/__init__.py |
sha256=v6mqcOB0xtqjJgZCJ9Ex5ohBvsRswyYyczR-ir1cbVc
|
14710 |
scirpy/datasets/_processing_scripts/.gitignore |
sha256=tJU9BUGoJ9keaQPQ0cjD8G2Bz6xTjg4YFnq6feKToeU
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27 |
scirpy/datasets/_processing_scripts/3k_barcodes.csv |
sha256=FCJM8D3Vj2azBt51iac7NHRYr60rEgLai_RlBZ7Yxhk
|
77249 |
scirpy/datasets/_processing_scripts/README.md |
sha256=7Snd4vvvCVJEdDxuXC6rhNYXuA-xlMFYqW2Gn2jQusg
|
129 |
scirpy/datasets/_processing_scripts/jupytext.toml |
sha256=vd4d6tUOXnoLv1VpxY1xdyCuI3rnGae3M-78CL0YOJM
|
129 |
scirpy/datasets/_processing_scripts/maynard2020.py |
sha256=bRp6rPWUTCCWCiUEt7_G0-lB7Sqcoy0f96n7kGvl0wo
|
6523 |
scirpy/datasets/_processing_scripts/wu2020.py |
sha256=A78HoZBc4vy9mtIsvlf0aqYFLeMYlu9XtF8HNjAITKI
|
3475 |
scirpy/datasets/_processing_scripts/wu2020_3k.py |
sha256=qeWkeVUYiA7vOLl71RDARFyEdF9gj_CvX7Yl11bZZeM
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676 |
scirpy/get/__init__.py |
sha256=iiYrEK65yEXHsVo2TS9KWufMvyg17LIPtvhDp5jrFVo
|
7012 |
scirpy/io/__init__.py |
sha256=bT--xSjOftdPvS2wZt0wgoXx_C5xtcSBC5yPEpxTPLo
|
697 |
scirpy/io/_convert_anndata.py |
sha256=fjnerHaPAe07wZTU0o6Ad7DT1TnreW6-Y5dnf1TSyZs
|
2933 |
scirpy/io/_datastructures.py |
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|
6788 |
scirpy/io/_io.py |
sha256=uY4L9R4-iU1K7iEIjeOMSRHu0i-ySLsjjTb7UOC5UIc
|
26824 |
scirpy/io/_legacy.py |
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3147 |
scirpy/io/_util.py |
sha256=WdF4z0Ypifvwad_kD93IxqZ2sobLHO1PdaA0r1ijv8U
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2118 |
scirpy/io/_tracerlib/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
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0 |
scirpy/io/_tracerlib/core.py |
sha256=xYzOyc0VlgtducprQM9teRtncHmSpRkVYoCcTmX5ufY
|
16978 |
scirpy/ir_dist/__init__.py |
sha256=39autdb0BT4eBkEDpAcI1HQ42UBL1VgzSk13nq_RlHA
|
12921 |
scirpy/ir_dist/_clonotype_neighbors.py |
sha256=XDAm_EigmH9VIJS3p9Gwzl1jmDhdFscLlBvHK6N36vU
|
24469 |
scirpy/ir_dist/_util.py |
sha256=ZXYWpt9GboVeABi4hqUkeCtGUgmGHpuy33NsQrznEmQ
|
17232 |
scirpy/ir_dist/metrics.py |
sha256=wwYD8bImNWEMpFFOwxcRmauIOD0i0Kekwo5uJn4Eb68
|
58439 |
scirpy/pl/__init__.py |
sha256=KafFwh0nqyeljQp0eIZGT3H17UWUnSf_aS0xZQpyq14
|
477 |
scirpy/pl/_clonal_expansion.py |
sha256=1rkwDmuGHtHXU9Rdlcxq5trurz6An3FUVRlPkFGaANc
|
3248 |
scirpy/pl/_clonotype_imbalance.py |
sha256=lwzo22FjaL5VPgdyxJbWXlt-FzpRJyAHyhh7ScsKgPM
|
5794 |
scirpy/pl/_clonotype_modularity.py |
sha256=ENFFFf9dYN4R7poupvNhB4iSq_tR1zBDInWml0t-SUQ
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7305 |
scirpy/pl/_clonotypes.py |
sha256=g3rVO0i8asrAe0Kw4v8Iq6SFHRdKiFFAxs6mCw1aLYU
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24077 |
scirpy/pl/_diversity.py |
sha256=RgkzomkhGek1AUJ9ktPsZfzXM26ZjcbF_H9A4167XcQ
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2084 |
scirpy/pl/_group_abundance.py |
sha256=2gWw6Fk0hwH5bysHv6guzzX5aLEIm67Zjo14GBvwC1s
|
3555 |
scirpy/pl/_repertoire_overlap.py |
sha256=9EW4kzSRYMROr80Imhs4o-islgtENeSQWBv9LKaK5eo
|
6629 |
scirpy/pl/_spectratype.py |
sha256=BYXxMLQh6yk8WavjWP16omHPPCx64GFKJkSh1IN-kzI
|
3459 |
scirpy/pl/_vdj_usage.py |
sha256=yroEemFQ8HK6QRrHWApqvwzkgUm8SosKyH-QpJ7zt4I
|
12280 |
scirpy/pl/base.py |
sha256=jaAMmU7n4Mu2oWxOeGNbq9NX34O3hnoY_ec_97iZgug
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14380 |
scirpy/pl/styling.py |
sha256=Ks8nds9RsPKTJC1F0AXLwCCcVTrppNqyPwdvpdhNJOc
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5128 |
scirpy/pp/__init__.py |
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736 |
scirpy/pp/_index_chains.py |
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8294 |
scirpy/pp/_merge_adata.py |
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3407 |
scirpy/tests/__init__.py |
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68 |
scirpy/tests/conftest.py |
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21225 |
scirpy/tests/test_clonotypes.py |
sha256=UPkLGU0c-tYywzJZdh07ZQpgpeeq2kRH85n0F3Ga2dM
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12250 |
scirpy/tests/test_datasets.py |
sha256=ZBiAEhlP9zEUroGWscQuYn9X83vEnvHsnDeZhca5DaE
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206 |
scirpy/tests/test_get.py |
sha256=NY8svi7OTzbYyYqZyt36eEbC4DghR4C896pyxf69rU4
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981 |
scirpy/tests/test_io.py |
sha256=diwhhzVxtREPM7Oo2S4gP5ktrPqyNmnVHW0i2bgVA-U
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32543 |
scirpy/tests/test_ir_dist.py |
sha256=wAfXQQ33ef14r4k9Pp8ElpABK3BhfUH7bedBerGEPXw
|
18504 |
scirpy/tests/test_ir_dist_metrics.py |
sha256=r9Sqt68ZTlqGlCCOQmMfyjimDBqDvFljuI__20xNUGE
|
25877 |
scirpy/tests/test_ir_dist_util.py |
sha256=zwkvsbp6JNzuK477jI3p2dQXYSjTzChpJfpYdCNDPU0
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12304 |
scirpy/tests/test_ir_query.py |
sha256=PsmY7Uf3MFUyRBkV1S4iXhUJolRVYf3qN9N-Am2P6kI
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6530 |
scirpy/tests/test_plotting.py |
sha256=hsaV4EMNzVgK2BZmjSuY2cqMTH9p0na6Pj_zg9LuqJk
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5414 |
scirpy/tests/test_plotting_base.py |
sha256=stto9R_pei_XScx5BZywvfxHRITfeuFGvxI0jiItcWU
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2206 |
scirpy/tests/test_preprocessing.py |
sha256=I29zEngUN0f8zaA_XQt9nKcZJWn8EqHRK3ktdPwLIEE
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9026 |
scirpy/tests/test_tools.py |
sha256=JAI9QZxv4NiyVkRBGR3qQpHLNA4FMli_qi8SdgFiPIM
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24061 |
scirpy/tests/test_util.py |
sha256=gDN3_jlgOnCE9fp8-amF1u-iGmMjoNtERHtT2G5F6ks
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13769 |
scirpy/tests/test_workflow.py |
sha256=heA4U_XoRAyIhad30lKf1XD4ZDtizgI2EZLXMqe9QgY
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2495 |
scirpy/tests/util.py |
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5431 |
scirpy/tests/data/wu2020_200_v0_11.h5ad |
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4603503 |
scirpy/tests/data/wu2020_200_v0_6.h5ad |
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705118 |
scirpy/tests/data/10x/10k_BMMNC_5pv2_nextgem_Multiplex_vdj_t_all_contig_annotations_small.csv |
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scirpy/tests/data/10x/10k_BMMNC_5pv2_nextgem_Multiplex_vdj_t_all_contig_annotations_small.json |
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26270 |
scirpy/tests/data/10x/all_contig_annotations.json |
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41193 |
scirpy/tests/data/10x/filtered_contig_annotations.csv |
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3818 |
scirpy/tests/data/10x/sc5p_v2_hs_melanoma_10k_b_filtered_contig_annotations.csv.gz |
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541501 |
scirpy/tests/data/10x/vdj_nextgem_hs_pbmc3_t_filtered_contig_annotations.csv.gz |
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142732 |
scirpy/tests/data/airr/rearrangement_ig.tsv |
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9079 |
scirpy/tests/data/airr/rearrangement_tra.tsv |
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scirpy/tests/data/airr/rearrangement_trb.tsv |
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8769 |
scirpy/tests/data/airr/tra_issue_280.tsv |
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7996 |
scirpy/tests/data/bd/RhapVDJDemo_BCR_Dominant_Contigs.csv.gz |
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435028 |
scirpy/tests/data/bd/RhapVDJDemo_BCR_Unfiltered_Contigs.csv.gz |
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401151 |
scirpy/tests/data/bd/test_per_cell_chain.csv |
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scirpy/tests/data/bd/test_unfiltered_contigs.csv |
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scirpy/tests/data/bracer/changeodb.tab |
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scirpy/tests/data/clonotypes_test_data/j_gene_test_data.h5ad |
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scirpy/tests/data/hamming_test_data/hamming_WU3k_csr_result.npz |
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scirpy/tests/data/hamming_test_data/hamming_WU3k_histogram_result.npy |
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scirpy/tests/data/hamming_test_data/hamming_WU3k_normalized_csr_result.npz |
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scirpy/tests/data/hamming_test_data/hamming_WU3k_seqs.npy |
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scirpy/tests/data/tcrdist_test_data/tcrdist_WU3k_csr_result.npz |
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scirpy/tests/data/tcrdist_test_data/tcrdist_WU3k_seqs.npy |
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scirpy/tests/data/test_workflow/adata_10x_pbmc3_t.obs.expected.pkl.gz |
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scirpy/tests/data/test_workflow/adata_wu_200_old_schema.obs.expected.pkl.gz |
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scirpy/tests/data/tracer/SRR10782570/filtered_TCR_seqs/SRR10782570.pkl |
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scirpy/tests/data/tracer/cell1/filtered_TCR_seqs/cell1.pkl |
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scirpy/tests/data/tracer/cell2/filtered_TCR_seqs/cell2.pkl |
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scirpy/tl/__init__.py |
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scirpy/tl/_chain_qc.py |
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scirpy/tl/_clonal_expansion.py |
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scirpy/tl/_clonotype_imbalance.py |
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scirpy/tl/_clonotype_modularity.py |
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scirpy/tl/_clonotypes.py |
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scirpy/tl/_convergence.py |
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scirpy/tl/_diversity.py |
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scirpy/tl/_group_abundance.py |
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scirpy/tl/_ir_query.py |
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scirpy/tl/_repertoire_overlap.py |
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scirpy/tl/_spectratype.py |
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scirpy/util/__init__.py |
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scirpy/util/_negative_binomial.py |
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scirpy/util/graph/__init__.py |
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scirpy/util/graph/_component_layout.py |
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scirpy/util/graph/_fr_size_aware_layout.py |
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scirpy-0.19.0.dist-info/RECORD |
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