Wheelodex » Projects » scib-metrics

scib-metrics

View on PyPI — Reverse Dependencies (7)

0.5.3 scib_metrics-0.5.3-py3-none-any.whl

Wheel Details

Project: scib-metrics
Version: 0.5.3
Filename: scib_metrics-0.5.3-py3-none-any.whl
Download: [link]
Size: 37407
MD5: 1ff4888d83eb7430383cd6ce769c9aaf
SHA256: d893d04345a2975db0d33a86a080c47d413ba6a67b25d9be3e8e81af538024a2
Uploaded: 2025-02-17 10:04:39 +0000

dist-info

METADATA · WHEEL · RECORD

METADATA

Metadata-Version: 2.4
Name: scib-metrics
Version: 0.5.3
Summary: Accelerated and Python-only scIB metrics
Author: Adam Gayoso
Maintainer-Email: Adam Gayoso <adamgayoso[at]berkeley.edu>
Project-Url: Documentation, https://scib-metrics.readthedocs.io/
Project-Url: Source, https://github.com/yoseflab/scib-metrics
Project-Url: Home-page, https://github.com/yoseflab/scib-metrics
License: BSD 3-Clause License Copyright (c) 2022, Adam Gayoso All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: 1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. 2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. 3. Neither the name of the copyright holder nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission. THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
Requires-Python: >=3.10
Requires-Dist: anndata
Requires-Dist: chex
Requires-Dist: igraph (>0.9.0)
Requires-Dist: jax
Requires-Dist: jaxlib
Requires-Dist: matplotlib
Requires-Dist: numpy
Requires-Dist: pandas
Requires-Dist: plottable
Requires-Dist: pynndescent
Requires-Dist: rich
Requires-Dist: scanpy (>=1.9)
Requires-Dist: scikit-learn
Requires-Dist: scipy
Requires-Dist: tqdm
Requires-Dist: umap-learn (>=0.5.0)
Requires-Dist: pre-commit; extra == "dev"
Requires-Dist: twine (>=4.0.2); extra == "dev"
Requires-Dist: ipykernel; extra == "doc"
Requires-Dist: ipython; extra == "doc"
Requires-Dist: myst-nb; extra == "doc"
Requires-Dist: numba (>=0.57.1); extra == "doc"
Requires-Dist: scanpydoc[typehints] (>=0.7.4); extra == "doc"
Requires-Dist: sphinx-book-theme (>=1.0); extra == "doc"
Requires-Dist: sphinx-copybutton; extra == "doc"
Requires-Dist: sphinx (>=4); extra == "doc"
Requires-Dist: sphinxcontrib-bibtex (>=1.0.0); extra == "doc"
Requires-Dist: sphinxext-opengraph; extra == "doc"
Requires-Dist: joblib; extra == "parallel"
Requires-Dist: black; extra == "test"
Requires-Dist: coverage; extra == "test"
Requires-Dist: flake8; extra == "test"
Requires-Dist: harmonypy; extra == "test"
Requires-Dist: joblib; extra == "test"
Requires-Dist: numba (>=0.57.1); extra == "test"
Requires-Dist: pytest; extra == "test"
Requires-Dist: scib (>=1.1.4); extra == "test"
Requires-Dist: adjusttext; extra == "tutorial"
Requires-Dist: goatools; extra == "tutorial"
Requires-Dist: harmony-pytorch; extra == "tutorial"
Requires-Dist: mygene; extra == "tutorial"
Requires-Dist: numexpr; extra == "tutorial"
Requires-Dist: plotnine; extra == "tutorial"
Requires-Dist: pyliger; extra == "tutorial"
Requires-Dist: rich; extra == "tutorial"
Requires-Dist: scanorama; extra == "tutorial"
Requires-Dist: scvi-tools; extra == "tutorial"
Provides-Extra: dev
Provides-Extra: doc
Provides-Extra: parallel
Provides-Extra: test
Provides-Extra: tutorial
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 4116 characters]

WHEEL

Wheel-Version: 1.0
Generator: hatchling 1.27.0
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
scib_metrics/__init__.py sha256=iX-6DzxWrJoYCkcYiVQF6u8Uz9xcn36dTtlmjPinZyo 949
scib_metrics/_settings.py sha256=Rd4ymmbFoNTOfxnB87TU2-CFfQ4OJDZ94mJxhJTyS6A 4261
scib_metrics/_types.py sha256=yp76iBm1XjWhTmU_cbufJwrgiwUz4-L3J7DV3imiAhk 201
scib_metrics/benchmark/__init__.py sha256=HVUERJlRrEZV7BhpKJIsmOd1D_4XPoG2bp48AMlR3wY 130
scib_metrics/benchmark/_core.py sha256=jt4YpEjtOfDUgXZKrnMeyD8dnXVxHH3rc4ZjP3SwBVo 16213
scib_metrics/metrics/__init__.py sha256=AmSEViKzaGJuxZg7NbFn7Kd45stus_04De0SfjiwmvM 667
scib_metrics/metrics/_graph_connectivity.py sha256=jFc10EINB4AohbgAjV7-m1SGfAgu5tBeUk9ZcuoaSwY 1076
scib_metrics/metrics/_isolated_labels.py sha256=HkZKRop-I561rm_2H_23hsLFgCT36BHIyEWjzq2GYOc 2457
scib_metrics/metrics/_kbet.py sha256=JAmudHHv2EZ8l09fVTgFL_mgs99lgwHidx3zmKMEMvU 8419
scib_metrics/metrics/_lisi.py sha256=Le-1qCeJP_O1gnFgxaNXhirJU6QcK1j6km4nb28Oa7k 3503
scib_metrics/metrics/_nmi_ari.py sha256=kNKxPeEJKPVQXpMHFrENCTQdHLH84zdthq84xslsecg 4683
scib_metrics/metrics/_pcr_comparison.py sha256=dxj8uKhsMMmD-GrryfVgJyTlzhdRu08kujd8-e9SC8g 1983
scib_metrics/metrics/_silhouette.py sha256=ZOtuBJTSDiOsngangtaGmfoNLhMkvqy0UajBmq52xdM 2487
scib_metrics/nearest_neighbors/__init__.py sha256=HzTHBXj9sHF9w2Z20pi72OE9csyk1Kqlw_HldEPUgCE 196
scib_metrics/nearest_neighbors/_dataclass.py sha256=FwiFjYaT9tm_nKi2adnJ_rrFKVACf8-zpbGj60GTh3c 2473
scib_metrics/nearest_neighbors/_jax.py sha256=SrYNHzqj-de-3a34mrkBhH1q-ZCKf8-TlGlYcMI1rn8 1679
scib_metrics/nearest_neighbors/_pynndescent.py sha256=2eB9M48Zkd3ioD2crN3OQb07E-EMkle6vhYyqmeOgZU 1201
scib_metrics/utils/__init__.py sha256=hx_WkYcDJHzmCDcJs_DsI5pyPLabD3v3LNBtqMJzQxw 624
scib_metrics/utils/_diffusion_nn.py sha256=vqjG5oFqyu5123ZztaTVmnyHovZ6rPhFSRQh64Xp4-4 4199
scib_metrics/utils/_dist.py sha256=mf21Gx4S3RSlJy1vSpJenxnv4iT2cWfdvnIMQrfYfGM 1392
scib_metrics/utils/_kmeans.py sha256=2jnmhm6U8Kk-djLWhKOyKDG_Wn4T12OjdRb95FnZEOY 7418
scib_metrics/utils/_lisi.py sha256=4EsXTRQvuX2iXLczD5GxriWSUeSyMrg1vPmSzGbq5wo 4103
scib_metrics/utils/_pca.py sha256=uXYwX9gZkA1bCKGpOtbe6aKgnfMoL-SK3u5q7CACXWA 4223
scib_metrics/utils/_pcr.py sha256=wORbVtZrStbhFHWNMuY5F6qajyn3jnESoc5oTT9sjXI 2466
scib_metrics/utils/_silhouette.py sha256=oeX5zXI9BKfjnmzVof8lwnGiXnQ8adaBXzzSk3o0RvA 4189
scib_metrics/utils/_utils.py sha256=CRzgQykQPK0XTM46Ukpr7nI2yE5_rIAgZbotj5ZqDJs 1999
scib_metrics-0.5.3.dist-info/METADATA sha256=7Tb-22CNSiviJPPCcIITaHsKMCemEN3yqDH6vxJvyf8 8210
scib_metrics-0.5.3.dist-info/WHEEL sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ 87
scib_metrics-0.5.3.dist-info/licenses/LICENSE sha256=GRRQaq9hdMbxLTKedbegvvcbeF-Vh8UeHYIXoYUXXKM 1519
scib_metrics-0.5.3.dist-info/RECORD — —