scgpt

View on PyPIReverse Dependencies (0)

0.2.4 scgpt-0.2.4-py3-none-any.whl

Wheel Details

Project: scgpt
Version: 0.2.4
Filename: scgpt-0.2.4-py3-none-any.whl
Download: [link]
Size: 831725
MD5: 107903f02322659d623f15646b3b5e85
SHA256: aafa4ac8dcb5a3d7b81ab71f136baf324b7dc6d83109781340ba601fd236759f
Uploaded: 2025-03-31 00:29:56 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: scgpt
Version: 0.2.4
Summary: Large-scale generative pretrain of single cell using transformer.
Author: Haotian
Author-Email: subercui[at]gmail.com
Home-Page: https://github.com/bowang-lab/scGPT
Project-Url: Repository, https://github.com/bowang-lab/scGPT
License: MIT
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Requires-Python: >=3.7.12,<4
Requires-Dist: cell-gears (<0.0.3)
Requires-Dist: datasets (<3.0.0,>=2.3.0)
Requires-Dist: leidenalg (>=0.8.10)
Requires-Dist: numba (>=0.55.1)
Requires-Dist: orbax (<0.1.8)
Requires-Dist: pandas (>=1.3.5)
Requires-Dist: scanpy (<2.0.0,>=1.9.1)
Requires-Dist: scib (<2.0.0,>=1.0.3)
Requires-Dist: scikit-misc (>=0.1.4)
Requires-Dist: scvi-tools (<1.0,>=0.16.0)
Requires-Dist: torch (>=1.13.0)
Requires-Dist: torchtext
Requires-Dist: typing-extensions (<5.0.0,>=4.2.0)
Requires-Dist: umap-learn (>=0.5.3)
Description-Content-Type: text/markdown
[Description omitted; length: 8833 characters]

WHEEL

Wheel-Version: 1.0
Generator: poetry-core 1.1.0
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
scgpt/__init__.py sha256=Cr2xLwBUJ4BRv74sOPqL7wuFqn7xjEFgCG6LzL8o6qc 792
scgpt/data_collator.py sha256=RUPhbl_RYrqTXI52hwWZU1A9sYeBid_TPA7NozdUKOk 7497
scgpt/data_sampler.py sha256=iRFkaCdUK7O8bCP6NB3gVP5fSx0Sjh6e_zAX_NClFqM 3573
scgpt/loss.py sha256=uDCxa4u4PmCqBS79dm9O8rTkaXCjjExOxuwnNKrC2Jw 1068
scgpt/model/__init__.py sha256=nZEql4KL2AHcsM5xtBBZr-ehYUGHCNnqJzdcQIn4xMw 277
scgpt/model/dsbn.py sha256=Zm5EO1MLj0x6JnWcGLLDEl2Wu4rlW32R8mWZrn-E-5s 2393
scgpt/model/generation_model.py sha256=T1oN4crC7t8DQQlcsEKaY62h9SeMSTO6K7J8gt6Dpos 19667
scgpt/model/grad_reverse.py sha256=UGsK2zUbHcUPV3hDS2xKVTzRjSOmEArdYv2_J5F2StY 469
scgpt/model/model.py sha256=XDHlxS874zjECklb8R04xSQpt-W_I56fo1xkF7HWR-g 39110
scgpt/model/multiomic_model.py sha256=Jp4p_0RK27aT02x9U44L5tuKXmijEHFZjtMPTwsQaYE 40366
scgpt/preprocess.py sha256=KgzeO0xoyXd11SPqvtKrozPR9_RyvBVe-f_H0RLWMFk 12139
scgpt/scbank/__init__.py sha256=86BY3YocLgYNlq-GNxr6F0kJsVt-fuBV97X0j4XXqPM 611
scgpt/scbank/data.py sha256=xZ9FqaryPhZOXSbrCkmPdSUogNIDYzM-ero0THFOH2I 4044
scgpt/scbank/databank.py sha256=R3DacTYOohVotTcm9Upz2lrTyCzNeOrx5R7sK4rgvYQ 29599
scgpt/scbank/monitor.py sha256=g67TpuLe37AqVttJ9ynnfLzfFZUUPqvKBo4KMzv3zV8 129
scgpt/scbank/setting.py sha256=wQ9m1EbhOjswPKjLIhp9PoBSFuepNLedr5tTxqDCQBk 844
scgpt/tasks/__init__.py sha256=yRzENvMd7c_Yy0uOls4zRFKDIFUJXTmfC3SdL3q50Fc 91
scgpt/tasks/cell_emb.py sha256=8hr0BzorNdQENtS1p60o1-rbOjBAqBepyKcXMJeZPFQ 9953
scgpt/tasks/grn.py sha256=BCkblf3iaP6nljmef32xmhlYsYFleoZkOFoQxTZQ444 10925
scgpt/tokenizer/__init__.py sha256=3_jEjGW1oldK8EC0yluNEfCuOgA6J7wEuFbSBgnW8co 30
scgpt/tokenizer/default_census_vocab.json sha256=n-c88pkptcZqX__Psry90-OKOghoSM0S-PkYvPRY118 1317585
scgpt/tokenizer/default_gene_vocab.json sha256=r0kO1g7QRf5JLZEkE0zrCFXAVqE5jlDtokB3_6SUY0U 940574
scgpt/tokenizer/gene_tokenizer.py sha256=KxgIHVzXmy4qalpf7K5JBCQFiOsxh97Xgv7vimXBQFU 15757
scgpt/trainer.py sha256=rHmBConf89ztA1GpIPbhAUqwB_efI3bCyQx8Xa2FGtk 23754
scgpt/utils/__init__.py sha256=IwfhcGu98S7ppmplSR_LYvi-M7__eAzoJCaMu9HqHJU 20
scgpt/utils/util.py sha256=K7Yf6GLWlfpoV2GR_8HAtym-yiXsHVT2Oz_WrI54Iuc 19705
scgpt-0.2.4.dist-info/LICENSE sha256=HO6svtUeKJAYdCVUe8Lv0WwbetRRibffsh6DpFounZ4 1062
scgpt-0.2.4.dist-info/WHEEL sha256=bbU3AyvhQ312rVm7zzRQjs6axI1UYWC3nmFA2E6FFSI 88
scgpt-0.2.4.dist-info/METADATA sha256=klYunhLZ6RMGEFFkgkxEmRtdmyeq5w3QfG0rDrqGicc 9951
scgpt-0.2.4.dist-info/RECORD