Path |
Digest |
Size |
scdiffeq/__init__.py |
sha256=MTIlLUit1x9sz-zV2UvRX7FI9Wr2aYfs72Eqg5MzTvE
|
662 |
scdiffeq/__version__.py |
sha256=kUR5RAFc7HCeiqdlX36dZOHkUI5wI6V_43RpEcD8b-0
|
22 |
scdiffeq/_backend_utilities/__init__.py |
sha256=mj7xdUJzS5klgP9qrH0rBlj5rPelF-pEcr0jEqV-FIY
|
66 |
scdiffeq/_backend_utilities/_anndata_index_lookup.py |
sha256=YyWxtMPhGNHnFY1ljJz7rGsgLRi_7uYBa59z1iRzCEE
|
1273 |
scdiffeq/core/__init__.py |
sha256=durBi6ULglKV5DjLnSqM_KUnefrfI-mmyRfo3mJ68kE
|
292 |
scdiffeq/core/_scdiffeq.py |
sha256=S0mtsmCUrLqFCVyG81BneTtK1pPhc86fcoh-iZFno7A
|
6874 |
scdiffeq/core/_mix_ins/__init__.py |
sha256=smHUJSiEbYev3pXU3S31Hi-jZiItqq9-PbB9UW6Rgz8
|
310 |
scdiffeq/core/_mix_ins/_knn_mix_in.py |
sha256=vl2yjMyKRUlf8QZtm2rNg85qsC4Y7pXYfA0iktCXRqQ
|
1209 |
scdiffeq/core/_mix_ins/_logging_mix_in.py |
sha256=ij1XYeI_nrmqoBJEabD-69TUNAXLh6bxGGIaVCpTCrM
|
1235 |
scdiffeq/core/_mix_ins/_model_config_mix_in.py |
sha256=JThXKQTIRmdwAdK-E2F4ZwA5Tt49E0x0vJBoxuhsvE0
|
3091 |
scdiffeq/core/_mix_ins/_state_characterization_mix_in.py |
sha256=k5RrmVHsf6lBz_Vn3HtuSOYU5JaOZJRqxGi4vAM1M64
|
3953 |
scdiffeq/core/_mix_ins/_training_routine_mix_ins.py |
sha256=npew6hj-O_KYwcbtUQ1yfHxDi-Okcz9JdLVe5yTesn0
|
5179 |
scdiffeq/core/_mix_ins/_utility_io_mix_in.py |
sha256=wop_uw1Y2OL2YrE2NMH2QO5eynyS3LTPUF6JmNLI2_k
|
864 |
scdiffeq/core/callbacks/__init__.py |
sha256=2Qz369G0UBeS_XIQ6wvr0xDE5Bonj7IMaBNumpBKkUQ
|
459 |
scdiffeq/core/callbacks/_gradient_potential_callback.py |
sha256=jvZiof0TjE3r0L4UNk2vh-4-bLGcWq-iHZOVU78Mz5k
|
271 |
scdiffeq/core/callbacks/_intermittent_saves.py |
sha256=fsyqGmhyjppks8Gw-k6eXW9-cLx1cDpH2Sqi6E17MB0
|
834 |
scdiffeq/core/callbacks/_loss_accounting.py |
sha256=LXFixCESC4mOhmu_lIMANNocQSZL5UaKlPfnauv-Npw
|
4853 |
scdiffeq/core/callbacks/_model_logging.py |
sha256=P6k2DYYTbVcErUbwpuG_JmutjTL6bLOCMHDm_JM5XBk
|
4609 |
scdiffeq/core/callbacks/_testing.py |
sha256=HMNRQOdj0t7HlPBBphwLNVVeS1MC0K5kheh3WnvAU2g
|
806 |
scdiffeq/core/callbacks/_visualize_predictions.py |
sha256=2N22hyb03_ubzt8QLBqydfJT2TALasgXEkQTKhllyfU
|
5337 |
scdiffeq/core/callbacks/_visualize_tracked_loss.py |
sha256=E7xRogpzusXzVUfJ9fO3NjkEZ9RybAQ0P_YHvYTk34s
|
8440 |
scdiffeq/core/configs/__init__.py |
sha256=Mkkm_2qpg4eiGl_44wbTdTYcvFJAg6Js3qTDbJzNsAA
|
334 |
scdiffeq/core/configs/_configure_time_key.py |
sha256=NErRrv0DqrFthhOSoUoHBCOvGu2TCQAo5s-02cFMZOk
|
2667 |
scdiffeq/core/configs/_data_configuration.py |
sha256=I8tOb0s6ai8vYFhXu2w0RSqdrkZwtzSYxsiXkGN7AJE
|
14914 |
scdiffeq/core/configs/_lightning_callbacks_configuration.py |
sha256=cp2SA2yJ5T60MwFcvMt4V-M9XaM6tk5O5-DVVfOQ-9w
|
3215 |
scdiffeq/core/configs/_lightning_model_configuration.py |
sha256=n5RHVr5ona0f_fSFUbKSFpqxNutuC0EQLuDg88RqkXg
|
3227 |
scdiffeq/core/configs/_lightning_trainer_configuration.py |
sha256=dFYDrzL8nzw7w_nMF9bHijxxBWcJXykNB1nqOpBKVYQ
|
6844 |
scdiffeq/core/lightning_models/__init__.py |
sha256=CKy45-C58IDJZTyw9x44bkrogYPS3FV-3SJNqOxFb9c
|
1524 |
scdiffeq/core/lightning_models/_lightning_ode.py |
sha256=sDtl_oeaUmWWHFoopTIptYn2RCl3KkAvwQIgO0QKVgQ
|
2031 |
scdiffeq/core/lightning_models/_lightning_ode_fixed_potential.py |
sha256=PrcEjY4MgSINkBQti9700WcYuSDPRlj4KwhzF7wGMvs
|
1969 |
scdiffeq/core/lightning_models/_lightning_ode_prior_potential.py |
sha256=und6ow0xa30BttziKWRwHBBAKjItgGOPVE8Pj_RUJ64
|
2621 |
scdiffeq/core/lightning_models/_lightning_ode_vae.py |
sha256=5bIIm4X-HjG6c3SfyGRXJHwKr7nC1emk-vPLEXA4m8U
|
2732 |
scdiffeq/core/lightning_models/_lightning_ode_vae_fixed_potential.py |
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|
2556 |
scdiffeq/core/lightning_models/_lightning_ode_vae_prior_potential.py |
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|
3331 |
scdiffeq/core/lightning_models/_lightning_sde.py |
sha256=FMU0WR83gNzFzv1Lho1-4KKlToKghCxwEtU-6ZAyIno
|
2401 |
scdiffeq/core/lightning_models/_lightning_sde_fate_bias_aware.py |
sha256=G20VSutQ0Fr1GMjp1BXjt_l8tWLQaNR7YtooOkmnMAE
|
2542 |
scdiffeq/core/lightning_models/_lightning_sde_fixed_potential.py |
sha256=Ly9RkY2L-9h4RJLXjCuVl3-8Qm3gJPt5uh8UiDzNctM
|
1963 |
scdiffeq/core/lightning_models/_lightning_sde_fixed_potential_regularized_velocity_ratio.py |
sha256=yk3obJn6VZlp3SaOwvjrRZHgVO2Ahjwdxxr61iG2yD0
|
2297 |
scdiffeq/core/lightning_models/_lightning_sde_prior_potential.py |
sha256=gmxI6sWEbr2P_JuaT67b4C2-2pob0nTVvrxK8Hc6tjc
|
1946 |
scdiffeq/core/lightning_models/_lightning_sde_regularized_velocity_ratio.py |
sha256=J26654xu8Ov5S6FIC4BKGQl8J-mQ6grSZrYgO_x8vXw
|
2734 |
scdiffeq/core/lightning_models/_lightning_sde_vae.py |
sha256=3WoRML08A66PO7sKIEdlF716f5S8s0RORD-G_d4mxWA
|
3147 |
scdiffeq/core/lightning_models/_lightning_sde_vae_fate_bias_aware.py |
sha256=8-EY2K324SK_LI4pEwG6WW0uDm2dy9pVZFwvx-2stvY
|
3687 |
scdiffeq/core/lightning_models/_lightning_sde_vae_fixed_potential.py |
sha256=ZPQUh5bsPThyxro_W9yJlcXVtGuKoDxOLktn5tCTqwQ
|
3334 |
scdiffeq/core/lightning_models/_lightning_sde_vae_prior_potential.py |
sha256=5eGO7cFAmLTN7nFbbdbYyNzWljpfLENzqHfJZZXZ_48
|
3214 |
scdiffeq/core/lightning_models/_lightning_sde_vae_prior_potential_fate_bias_aware.py |
sha256=d60L7yAlVAk6GUCDA2qKlX322LTGTqf2CH1e0ZycbeY
|
3532 |
scdiffeq/core/lightning_models/base/__init__.py |
sha256=UAVzUsbX1ZR0iAdAg9BVJG7AORbMutb7Nb6uVosAEgk
|
154 |
scdiffeq/core/lightning_models/base/_base_lightning_diffeq.py |
sha256=u2lvAp_qH_BIxKMGyZyjNUZfV5_u-mQwBZeLMyGsN6w
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11876 |
scdiffeq/core/lightning_models/base/_batch_processor.py |
sha256=rOHKrbAz4lGBBmr4cocBHiZGi_SuWB-U_RT3Orf62yI
|
6018 |
scdiffeq/core/lightning_models/base/_sinkhorn_divergence.py |
sha256=MLubPq4uRSgjAE2P5foHWsKjhCx2aB6l3UzdGcuzBR0
|
814 |
scdiffeq/core/lightning_models/mix_ins/__init__.py |
sha256=cZTQ8lO6RjWft55eynIcFa5HGQ47He59WNAR3BkHw9M
|
690 |
scdiffeq/core/lightning_models/mix_ins/_base_forward_mix_in.py |
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|
2257 |
scdiffeq/core/lightning_models/mix_ins/_drift_prior_mix_in.py |
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|
2535 |
scdiffeq/core/lightning_models/mix_ins/_fate_bias_drift_prior_mix_in.py |
sha256=FYu2GDi4hS3idDcgu9JLHiqFLnobzKd-C3LiwcCVW1E
|
2583 |
scdiffeq/core/lightning_models/mix_ins/_fate_bias_drift_prior_vae_mix_in.py |
sha256=jYYWW9OBchCTNUA9zwFiQrHICPyypdQoA8pNHLb2TRU
|
2805 |
scdiffeq/core/lightning_models/mix_ins/_fate_bias_mix_in.py |
sha256=x0k8PQiOHpBeTR5rFNW1XHDK2mDipBthY032y8IGFMI
|
2691 |
scdiffeq/core/lightning_models/mix_ins/_fate_bias_vae_mix_in.py |
sha256=POsMGJ1IqMUiJtIgSNOOH2fmAHzpJkK7YklNpJNCjDY
|
2822 |
scdiffeq/core/lightning_models/mix_ins/_potential_mix_in.py |
sha256=ftoQpceWZqMiPolbaAaW2hBxsxowxzjwru-Kcr9PfXc
|
1282 |
scdiffeq/core/lightning_models/mix_ins/_pre_train_mix_in.py |
sha256=97Yg-mfMv6fkWpVmuhGmuhx-HCaqiL-yN_xHWJY_IGM
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871 |
scdiffeq/core/lightning_models/mix_ins/_regularized_velocity_ratio_mix_in.py |
sha256=Un0dJ_2dO1G8A2ExYIFo4QzXDtXwYjahrFb_F1zYH0Y
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5137 |
scdiffeq/core/lightning_models/mix_ins/_sde_mix_in.py |
sha256=P8_qeiiSXN38IuAZ8SOiQmbsOXD89w2MOp7sDfzqBaM
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2261 |
scdiffeq/core/lightning_models/mix_ins/_vae_mix_in.py |
sha256=Ju8qhJd2piStKT2DI6Fd03LHa_1dIvicgBnZSX3elW8
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6785 |
scdiffeq/core/utils/__init__.py |
sha256=kXbyZ9Gcc3t2dTuu3vOUZQGABz2WrZBsGjdoM_tR6Ws
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1087 |
scdiffeq/core/utils/_anndata_inspector.py |
sha256=tKpccE-aPt5L2cLsAEh_dlBkTSnqqVAOPjBK-O05iGc
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931 |
scdiffeq/core/utils/_display_tracked_loss.py |
sha256=taBzOj7KPlpL9AYUBNuOnOKLW9tTW53u11zleEMLRow
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scdiffeq/core/utils/_fast_graph.py |
sha256=0c_3yu1tXb-5WMUokWZxPhNdeVDFg9gMBKxtlHggFvk
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2011 |
scdiffeq/core/utils/_filter_df.py |
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2381 |
scdiffeq/core/utils/_flexible_component_loader.py |
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2739 |
scdiffeq/core/utils/_function_fetch.py |
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1623 |
scdiffeq/core/utils/_function_kwargs.py |
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3402 |
scdiffeq/core/utils/_idx_to_int_str.py |
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scdiffeq/core/utils/_info_message.py |
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1156 |
scdiffeq/core/utils/_knn_graph_query.py |
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2139 |
scdiffeq/core/utils/_logger_bridge.py |
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scdiffeq/core/utils/_logging_learnable_hparams.py |
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scdiffeq/core/utils/_logs.py |
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6952 |
scdiffeq/core/utils/_normalize_time_to_range.py |
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scdiffeq/core/utils/_not_none_type.py |
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scdiffeq/core/utils/_scdiffeq_logger.py |
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3372 |
scdiffeq/core/utils/_sum_normalize.py |
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scdiffeq/datasets/__init__.py |
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scdiffeq/datasets/_human_hematopoiesis.py |
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scdiffeq/datasets/_pancreas.py |
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scdiffeq/io/__init__.py |
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scdiffeq/io/_data/__init__.py |
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scdiffeq/io/_data/_pickle_io.py |
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scdiffeq/io/_data/_read_h5ad.py |
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scdiffeq/io/_model/__init__.py |
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scdiffeq/io/_model/_checkpoint.py |
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scdiffeq/io/_model/_grouped_metrics.py |
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scdiffeq/io/_model/_hparams.py |
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scdiffeq/io/_model/_model_loader.py |
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scdiffeq/io/_model/_project.py |
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scdiffeq/io/_model/_version.py |
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scdiffeq/plotting/__init__.py |
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scdiffeq/plotting/_smoothed_gene_expression.py |
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scdiffeq/plotting/_temporal_expression.py |
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scdiffeq/plotting/_velocity_stream.py |
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scdiffeq/plotting/potential_landscape/__init__.py |
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scdiffeq/plotting/potential_landscape/_mesh_grid.py |
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scdiffeq/plotting/potential_landscape/_neighbor_smoothing.py |
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scdiffeq/plotting/potential_landscape/_potential_landscape.py |
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scdiffeq/plotting/potential_landscape/_scatter_3d.py |
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scdiffeq/plotting/potential_landscape/_surface_3d.py |
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scdiffeq/tools/__init__.py |
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scdiffeq/tools/_annotate_cell_fate.py |
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scdiffeq/tools/_annotate_cell_state.py |
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scdiffeq/tools/_annotate_gene_features.py |
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scdiffeq/tools/_cell_potential.py |
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scdiffeq/tools/_drift_diffusion_state_characterization.py |
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scdiffeq/tools/_fate_perturbation_experiment.py |
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scdiffeq/tools/_fate_perturbation_screen.py |
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scdiffeq/tools/_final_state_per_simulation.py |
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scdiffeq/tools/_grid_velocity.py |
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scdiffeq/tools/_invert_scaled_gex.py |
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scdiffeq/tools/_knn.py |
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scdiffeq/tools/_knn_smoothing.py |
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scdiffeq/tools/_simulation.py |
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scdiffeq/tools/_velocity_embedding.py |
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scdiffeq/tools/_velocity_graph.py |
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scdiffeq/tools/utils/__init__.py |
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scdiffeq/tools/utils/_compute_cosines.py |
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scdiffeq/tools/utils/_get_iterative_indices.py |
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scdiffeq/tools/utils/_get_neighbor_indices.py |
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2839 |
scdiffeq/tools/utils/_norm.py |
sha256=8de2MtCWp7JBlJQG-hzBXqX0Ys7uy3zpCqEEdHrZXWU
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2016 |
scdiffeq/tools/utils/_scverse_neighbors.py |
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5463 |
scdiffeq/tools/utils/_transition_matrix.py |
sha256=DnEk6l48pg0r_MHlO0NItvI_aL2IeKuZ0_lVgxFkDxE
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3655 |
scdiffeq-0.1.0.dist-info/LICENSE |
sha256=hIahDEOTzuHCU5J2nd07LWwkLW7Hko4UFO__ffsvB-8
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34523 |
scdiffeq-0.1.0.dist-info/METADATA |
sha256=AB1-DrlpDTb69lp4ty2D8MI0lICmk6-Lbx9xt9l6Sgc
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2842 |
scdiffeq-0.1.0.dist-info/WHEEL |
sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ
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92 |
scdiffeq-0.1.0.dist-info/top_level.txt |
sha256=Am61V7OjsrlJlfeB3JXT8q2w1KYT4QCjfIiTI_qn4IM
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9 |
scdiffeq-0.1.0.dist-info/RECORD |
— |
— |