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scAllele

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0.0.9.4 scAllele-0.0.9.4-py3-none-any.whl

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Project: scAllele
Version: 0.0.9.4
Filename: scAllele-0.0.9.4-py3-none-any.whl
Download: [link]
Size: 49042
MD5: f495e530a2cae11e19c93efcc22ed8ee
SHA256: 07b6d5ca78a9ed26ba8c37062e1eb07eb36af8287825470b2b1e1ffb3847228a
Uploaded: 2024-04-22 22:13:16 +0000

dist-info

METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt

METADATA

Metadata-Version: 2.1
Name: scAllele
Version: 0.0.9.4
Summary: A versatile tool for the detection and analysis of nucleotide variants in scRNA-seq
Author: Giovanni Quinones Valdez
Author-Email: giovas[at]ucla.edu
Home-Page: https://github.com/gxiaolab/scAllele
Project-Url: Bug Tracker, https://github.com/gxiaolab/scAllele/issues
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Requires-Python: >=3.8
Requires-Dist: biopython
Requires-Dist: glob2
Requires-Dist: HTSeq
Requires-Dist: multiprocess
Requires-Dist: networkx (>=2.4)
Requires-Dist: numpy
Requires-Dist: pandas (>=1.3)
Requires-Dist: pickleshare
Requires-Dist: psutil
Requires-Dist: pyfaidx (>=0.5.9.5)
Requires-Dist: pysam (>=0.9.1)
Requires-Dist: vcfpy
Requires-Dist: scikit-learn (>=0.23.1)
Requires-Dist: scipy
Requires-Dist: statsmodels (>=0.11.1)
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 10910 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.43.0)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
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scAllele/gqv_bam_utils.py sha256=qQ_EcZzOL5ZRiqDy-tHyO0wFzT8lySWBFjYF3uYgxDo 13311
scAllele/gqv_dbg_utils.py sha256=BTtgneOSnB1U2SqZcQi7x-sp5y4YczRKqairTMSlWb0 20753
scAllele/gqv_glm.py sha256=xaT7Pcyor5slLV5JvmMxWZb9pTC_J-mFwhFlFRqCVt4 9204
scAllele/gqv_mutual_information.py sha256=saGZvC4eKc73cVSKCXtrftOJ8fkIoXBpsNH5e2i6l8Q 7622
scAllele/gqv_software_management.py sha256=VVNZN1tsbVl515xQnN8qcp_0t-59pr4GbZXTiWXfK6A 1845
scAllele/gqv_utils.py sha256=n1pMyS1VM6afAEtiHhvt2foAEnpTPajLbXOAO1gV8V0 52542
scAllele/gqv_vartool.py sha256=zJ2yn7wPaF-MREj9TwX3DzfWsuLiBnQERU8eFmFXWcg 22953
scAllele/scAllele.py sha256=b-qpY7JL-epTbaePqreJTxichVfiZPwnaCUSPURC04c 14520
scAllele/glm/GM12878_smartseq2.all.feature_matrix.tab.DELETION.glm.pickle sha256=oee_YLPiaik6MaBDDMM1mDjy6AEw1mvyk6F9wN5x6sc 779
scAllele/glm/GM12878_smartseq2.all.feature_matrix.tab.INSERTION.glm.pickle sha256=IXveYqxhXaCNfY89-gDG2lQZYTkH-Xwr4CuQUAA3zGg 779
scAllele/glm/GM12878_smartseq2.all.feature_matrix.tab.SNP.glm.pickle sha256=_pIaLr8Ou7JldDG7nxYG_Uo96X4fTKF9UOyXO6ewJsw 779
scAllele/glm/GM12878_smartseq2.all.feature_matrix.tab.SNV.glm.pickle sha256=xEsmjHHFprR0J0wXkoQB9BNGqPFFzjsxqgtXsVPcTfw 757
scAllele/glm/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
scAllele-0.0.9.4.dist-info/LICENSE sha256=Q1YreE78HHwKIAJ1tqz5QwJAdNdPo1h1gCKvyWcbMQQ 1291
scAllele-0.0.9.4.dist-info/METADATA sha256=h5sDY-DRRLplqjgmy9y32F_5f47IihshQ4P4T3FZ5aM 11874
scAllele-0.0.9.4.dist-info/WHEEL sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ 92
scAllele-0.0.9.4.dist-info/entry_points.txt sha256=UT2c-C_5ddmgEkZj22iVQZrcr5Jx7e-ozuWHtD-Wr_M 91
scAllele-0.0.9.4.dist-info/top_level.txt sha256=99Tt7HuTrsgXpy1iKcEGYv3YX4O97iJOZHfk3FLIkCE 9
scAllele-0.0.9.4.dist-info/RECORD — —

top_level.txt

scAllele

entry_points.txt

[console_scripts]
scAllele = scAllele.scAllele:main
scAllele_train = scAllele.gqv_glm:main