scab

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0.2.4 scab-0.2.4-py3-none-any.whl

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Project: scab
Version: 0.2.4
Filename: scab-0.2.4-py3-none-any.whl
Download: [link]
Size: 1999110
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Uploaded: 2025-04-01 05:11:22 +0000

dist-info

METADATA

Metadata-Version: 2.4
Name: scab
Version: 0.2.4
Summary: Single cell analysis of B cells
Author: Bryan Briney
Author-Email: briney[at]scripps.edu
Home-Page: https://github.com/brineylab/scab
Classifier: Development Status :: 5 - Production/Stable
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
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Description-Content-Type: text/markdown
Dynamic: author
Dynamic: author-email
Dynamic: classifier
Dynamic: description
Dynamic: description-content-type
Dynamic: home-page
Dynamic: license-file
Dynamic: requires-dist
Dynamic: requires-python
Dynamic: summary
License-File: LICENSE
[Description omitted; length: 2042 characters]

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top_level.txt

scab

entry_points.txt

scab = scab.scripts.scab:cli