sc3dg

View on PyPIReverse Dependencies (0)

0.0.65 sc3dg-0.0.65-cp39-cp39-manylinux1_x86_64.whl
0.0.59 sc3dg-0.0.59-cp39-cp39-manylinux1_x86_64.whl

Wheel Details

Project: sc3dg
Version: 0.0.59
Filename: sc3dg-0.0.59-cp39-cp39-manylinux1_x86_64.whl
Download: [link]
Size: 430284
MD5: 271cdaa405083836eacff19dda440a08
SHA256: 050e421ac13447787e2b3e15ca1fb15476e4ae0aab99986f27a9f7b1b60dff8d
Uploaded: 2024-06-26 14:56:27 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: sc3dg
Version: 0.0.59
Summary: A toolkit for processing single cell Hi-C data
Author: Your Name
Author-Email: your.email[at]example.com
Requires-Dist: numpy (==1.24.1)
Requires-Dist: click
Requires-Dist: pandas (>=1.5.1)
Requires-Dist: cython
Requires-Dist: cmake
Requires-Dist: pysam
Requires-Dist: biopython (>=1.81)
Requires-Dist: sphinx
Requires-Dist: recommonmark
Requires-Dist: sphinx-click
Requires-Dist: nbsphinx
Requires-Dist: sphinx-rtd-theme
Requires-Dist: anndata
Requires-Dist: bioframe (>=0.4.1)
Requires-Dist: cached-property (>=1.5.2)
Requires-Dist: chart-studio (>=1.1.0)
Requires-Dist: cleanlab (>=2.4.0)
Requires-Dist: click (>=8.1.6)
Requires-Dist: cloudpickle (>=2.2.1)
Requires-Dist: cooler (>=0.9.2)
Requires-Dist: h5py (>=3.7.0)
Requires-Dist: igraph (>=0.10.6)
Requires-Dist: leidenalg (>=0.10.0)
Requires-Dist: Levenshtein (>=0.21.1)
Requires-Dist: markdown-it-py (>=3.0.0)
Requires-Dist: MarkupSafe (>=2.1.3)
Requires-Dist: matplotlib (>=3.5.3)
Requires-Dist: numba (>=0.57.1)
Requires-Dist: scipy (>=1.7.0)
Requires-Dist: pandas (>=1.3.4)
Requires-Dist: pyyaml
Requires-Dist: pysam (>=0.15.0)
Requires-Dist: cooltools
Requires-Dist: pyBigWig (>=0.3.22)
Requires-Dist: PyYAML (>=6.0.1)
Requires-Dist: scikit-learn (>=1.1.2)
Requires-Dist: scipy (>=1.9.3)
Requires-Dist: seaborn (>=0.12.2)
Requires-Dist: tornado
Requires-Dist: tqdm (>=4.65.0)
Requires-Dist: umap-learn (>=0.5.3)
Requires-Dist: hicmatrix (>=17)
Requires-Dist: unidecode (>=1.3.6)
Requires-Dist: scanpy (>=1.9.4)
[No description]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.37.0)
Root-Is-Purelib: false
Tag: cp39-cp39-manylinux1_x86_64

RECORD

Path Digest Size
sc3dg/__init__.py sha256=klMG087LV4wjx9UhZzyXtaoEtlkQ-27uSojRtofa7AA 39
sc3dg/cli.py sha256=cbc0ayoram9Smp40SvdiOaIqaT4SjmYAHBQIahd6rk0 520
sc3dg/analysis/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
sc3dg/analysis/api.py sha256=byb_hZ25nrFo5Mgt7XQBssviO01PtEQJyd9iBoj3lEw 59725
sc3dg/analysis/embedding.py sha256=QY4ZFruI30bKMYZBLkfy_Eb69XwfR26jP6jicfVvOoY 5871
sc3dg/analysis/genome.py sha256=54lxoDtYyY14fhbTKVrVQrMNAhHNGcDyNORVlfh0Zm8 4317
sc3dg/commands/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
sc3dg/commands/accum.py sha256=3TPIOhZMBTFcJDho4rUgf4hGVczi9JWaNOP02Q0mx6s 5343
sc3dg/commands/count.py sha256=XE6agTir3NZr-Y9AdpxSfTKWfdPRRhN73WvZYPJGru0 5421
sc3dg/commands/gini.py sha256=Tc11Lu82n8d4LnQ9Dt3zsdQ65hcg6Wy1ACFpsU-PA5M 776
sc3dg/commands/impute.py sha256=MIK2DrvFShVytiEJ5iBi8JFsa0faEzMBxuVryzjFEI4 7349
sc3dg/commands/index.py sha256=ToGpt6CAKBMS14s_LYoe3DSNQJ303hVebYdj9BIG0WQ 653
sc3dg/commands/merge.py sha256=pVAjgNgOjKeS_9EkNtO8wvMJ6apx8f_XAlGswnvc5HU 2212
sc3dg/commands/model.py sha256=DNwMixwk9lmIacghGgJUo5WoMRYsWfV_Vf0OB1MglNo 3342
sc3dg/commands/nDS.py sha256=RXAYNOyLdKEGyhbjhFgTbJPbv9T1-gI4LS9Aom1ulSY 2296
sc3dg/commands/ssce.py sha256=RqFQwLvhwEfj1VpHWjEpa__nZVhXednhwRF-Uv1ftgk 8202
sc3dg/model/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
sc3dg/model/dyn_util.cpython-39-x86_64-linux-gnu.so sha256=aP-05A64p9A4Fr5gVP-IHNtbW-SlW9b70QYopSYHB00 201440
sc3dg/model/dyn_util.pyx sha256=p9tWWZqHKGQY8jPy0oTiTyrtQeIDZ3w4_eshBhrLDlE 22477
sc3dg/model/nuc_dynamics.py sha256=xMyZlWcsxSjbqnqAHGeKkorVex8MhUTfNRernMeglf0 69252
sc3dg/model/setup_cython.py sha256=AsEcmh7bdFa1H-LCvBj4Cv1-UCytshOMes67iyN4REU 550
sc3dg/pairtools/__init__.py sha256=_rdzZkXaknmqkHmFeXrpgDTJGuGoVfBADbBcpu1wBVk 176
sc3dg/pairtools/__main__.py sha256=8hDtWlaFZK24KhfNq_ZKgtXqYHsDQDetukOCMlsbW0Q 59
sc3dg/pairtools/_logging.py sha256=UT1SANB0EM2xyZXHR2FmUYxIr9uYFnw7e8UAk0FDVv0 402
sc3dg/pairtools/cli/__init__.py sha256=VyKgWPV4tcJ7jD07XC1HxKPhbWRuXut7XBbFjTIZQ0M 5456
sc3dg/pairtools/cli/dedup.py sha256=O8YLPnw-kHKlS35-4yVSi8pfuDTVyek3C3RrpmixMPs 18498
sc3dg/pairtools/cli/filterbycov.py sha256=zlgOiafujN0P3ZcTIlwAzmVIkS9CJcJy4fPQUyi_CXI 9794
sc3dg/pairtools/cli/flip.py sha256=Et6SMqih75h_6cLk8J-Ypj65LclcisBLnSmBAJdIdAE 4656
sc3dg/pairtools/cli/header.py sha256=X0jEadPw46SDptCz7eWHEozbPalEq1m5LO-p4PDHdFQ 18402
sc3dg/pairtools/cli/markasdup.py sha256=YJtXClV1ob2GHFFRbhgKElnYG1YTIFQHI57vZJtS2m8 1988
sc3dg/pairtools/cli/merge.py sha256=uH6J3DRj1pKE5hWwUuiW27eZsG2mWXILCcGkrrO7kdc 7587
sc3dg/pairtools/cli/parse.py sha256=FSFHaUa7u_yi1rBfjzhGf79ILVq-HfVs7UJjDzyxGXI 9414
sc3dg/pairtools/cli/parse2.py sha256=RelqqtsVx65BFrnRv16vWU6OM1tsVxHrdEQgrjVVMfQ 12508
sc3dg/pairtools/cli/phase.py sha256=gGYigFCR2RhdtxTaRD0zy-aVDbWJhZrW4nlc0fBqzp0 10634
sc3dg/pairtools/cli/restrict.py sha256=v5OdNRJQfBs8AVDNbJ9O-BMPDfuWmeGqj9NRPjhRA_Q 3387
sc3dg/pairtools/cli/sample.py sha256=me7xCms2PK3T9iK4e1GmOmKqoRyg3DImQCA7kJ1Hyq4 1932
sc3dg/pairtools/cli/scaling.py sha256=tg6CgPZ3JK5VkBhza-DF3emnGBY8PLK1p5_Ix18mhgU 2927
sc3dg/pairtools/cli/select.py sha256=7O-M3isuJnYNifDJN-740qZTk_XDnxhe99lOjQYiQeI 8067
sc3dg/pairtools/cli/sort.py sha256=gTlU5EPTHaKqk8ysuvNqfHC7K0OADGvsOQhb4LhAXRo 4343
sc3dg/pairtools/cli/split.py sha256=ReSA5amhRCFdfOMk51OHOqM9TDV-Ym6p2T7GeHK1mBo 4749
sc3dg/pairtools/cli/stats.py sha256=PXv1x9okatDIteEjPlcnVawAiHh747BRp-uN7WRW_yI 7062
sc3dg/pairtools/lib/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
sc3dg/pairtools/lib/dedup.py sha256=5WSobCcsiznc1LY2_qMVbPAEr6Q-yujGfVm7JFB7R58 18521
sc3dg/pairtools/lib/dedup_cython.cpython-39-x86_64-linux-gnu.so sha256=mXVsLTYp-Me9ay3bRRYes4k3hSPWoGKec_gAxMtZnC4 275120
sc3dg/pairtools/lib/dedup_cython.pyx sha256=yme28iBAsZDMjvNvW97ACL7adSPJlcv1BFM-IiPRVWg 5650
sc3dg/pairtools/lib/fileio.py sha256=jaBO-SZ7wbH6xfG_N03JN1W-heDuQ75thvX54-un0zw 8212
sc3dg/pairtools/lib/filterbycov.py sha256=9dntF3GBi01-OZ410vh-f-q6FRw7YLVbX5Oha1pGQGY 7934
sc3dg/pairtools/lib/headerops.py sha256=qMFp76akz6RE9ZRj5K1F8O4Icx4pW3fXHPJpkUJ-1Mo 24272
sc3dg/pairtools/lib/pairsam_format.py sha256=amUBuZAgMICxpTtQ3MdvZLm7mnBXax4ZIx1EEiJIdzc 1175
sc3dg/pairtools/lib/parse.py sha256=a3ikgphAq7H86lBNZb4j3-18ZGUCLLl8DmBDpg9abRk 56345
sc3dg/pairtools/lib/parse_pysam.cpython-39-x86_64-linux-gnu.so sha256=ChEEUOf-RJyO-DMGPX7Y2-aWmOsqYYqjCdOij_U6_2w 82768
sc3dg/pairtools/lib/parse_pysam.pyx sha256=LsbLT21DrzXxiS4I8CRZa2kCe1p1jUl2s2KWr2k65ms 4717
sc3dg/pairtools/lib/phase.py sha256=5319MFL3r_Yqkbc2TRw3XeRL1fsDyEjtnrJ2CRE6_bw 2569
sc3dg/pairtools/lib/regions.cpython-39-x86_64-linux-gnu.so sha256=qyNpOksdn47yaTMttF1Qy56pvZwxNRJ73z9CQsS7xas 72272
sc3dg/pairtools/lib/regions.pyx sha256=eRCbk1sRNC_W1_FMO1xp_EhdHtidEEtZRpRDFM7r4qo 1649
sc3dg/pairtools/lib/restrict.py sha256=mkROQWduB0FFWWDimQ5UXVGh4cXTIlFMtSw-pUecROM 851
sc3dg/pairtools/lib/scaling.py sha256=PV-ldVvIn4p0gmNd2XVKkQ34A1-SfYIa8GXUa_Sh2sU 13583
sc3dg/pairtools/lib/select.py sha256=XRjy9n-10e5oG6GNOc3XbjTJNFICZneGJs1intWlb2c 4168
sc3dg/pairtools/lib/stats.py sha256=xS5enicm-0CCvr13vFtc06K4oLk0KoLzz1XTE4GVmWE 39339
sc3dg/utils/Generate_scNanoHIC_pairs.py sha256=XGF20O_IFeAe-WfNWCwfU2j7YtW0-BmOPMmCjtryzxY 2951
sc3dg/utils/ReformSAM.py sha256=_jGEWjfAm-LG---80G1_hzvJTO_1_tdHUR6etDEWtSo 1361
sc3dg/utils/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
sc3dg/utils/analysis.py sha256=ECNyn1fJ7PI3im6i8o2v2x5ns2Pw4a7pXdQh_pyaaBc 10612
sc3dg/utils/assembly.py sha256=NeEOWPcO5WH5aCyBdaJ2O82SATB7I__dFq9fDx0tV3U 7538
sc3dg/utils/download.py sha256=vDvNkJtFByosiUpfcMxM_OdgsmYpax8u2kka5M4Fwo8 2555
sc3dg/utils/embedding.py sha256=WURgEz4obO1T028VW4831vn9pMn5H2bwdDhar9JO1aA 3706
sc3dg/utils/general.py sha256=GeDUvsZ9YfY-b5zhcPr5bNm1vAlAA3IQkS-B7Z_IvaY 10805
sc3dg/utils/gini.py sha256=PHX0eObzpnCKFjnCuvufrWuwu-QohU0Jd8OjeIWxobE 6193
sc3dg/utils/help.py sha256=ZhTakKvsHyWFXRLFkmBF-poSf4oQoTYUXf7TJityV94 1282
sc3dg/utils/plot.py sha256=vlLd4GdYjlGabOJzB_VaeHZ-pIgHhoq0HiAD_eLUoCc 9663
sc3dg/utils/scMethyl.py sha256=8t2XDuTgeymNd_DyZwc7eQKLhJAg7XzUcDLrY_qQJmE 15194
sc3dg/utils/scNano.py sha256=dbbFHAxmE3Gcr40pcnDsUVVevWTh-9tAXQQiIxQ7_rI 7287
sc3dg/utils/scNano_barcode.py sha256=k79eOwKS_5G_ApQPcnLTyxKRRpbEYe109TC8qwT0SvU 1423
sc3dg/utils/scSPRITE.py sha256=XFRRvy2GDUM0iY51_cPclvz-qGup7idjzs_CuH6Wfpo 13736
sc3dg/utils/scaffold.py sha256=flgvSmQP615XBvkEuQrd3SBLyLc8jqywIkpMrWpGXYo 24693
sc3dg/utils/sciHic.py sha256=OjS87BdpZturdHhHsK8gMF6ThHTG9bVUN7WN8xnBamc 12463
sc3dg/utils/sn_m3c.py sha256=_aidyz6sHfwLLbBv4JiYZpN5RRH8NduQ42HOZ3X2FVs 11981
sc3dg/utils/tools.py sha256=9k4iVUOZw20rKsBwUPmNJfVQN5YITIlT0LCdzk1LNBI 5223
sc3dg/utils/visualize.py sha256=wk61hwQeywFuwpd_nv63XJtYFTsjvf7MfOMy-zZ5PoM 2722
sc3dg-0.0.59.dist-info/METADATA sha256=3sFpqS3EUwIOHKxnFMDmniqMGsx2jCZL6pMTc33O20E 1594
sc3dg-0.0.59.dist-info/WHEEL sha256=Ipq_ne2XugZ-YyiQRsaicaeIIhaJfLNxvOxYAXZHOy4 108
sc3dg-0.0.59.dist-info/entry_points.txt sha256=alJtJGxS0R0IxZ277u9T43E4-hsdm5Uo8CG4DAW0FVo 77
sc3dg-0.0.59.dist-info/top_level.txt sha256=3Y8_AfPLWv0B8MhHg6d6EQVikMABiEcrx-CRiZniYHs 6
sc3dg-0.0.59.dist-info/RECORD

top_level.txt

sc3dg

entry_points.txt

pairtools = sc3dg.pairtools.cli:cli
stark = sc3dg.cli:cli