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sarand

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1.0.1 sarand-1.0.1-py3-none-any.whl

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Project: sarand
Version: 1.0.1
Filename: sarand-1.0.1-py3-none-any.whl
Download: [link]
Size: 859714
MD5: 13ef62902d3c6fb472d2b65fda45da51
SHA256: eea3736c17efc9758f9f845086a361ae88fc94f5f0d33fd5e16e46dc68a54a94
Uploaded: 2021-06-04 18:06:16 +0000

dist-info

METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt · zip-safe

METADATA

Metadata-Version: 2.1
Name: sarand
Version: 1.0.1
Summary: Tool to extract the neighborhood of the target Antimicrobial Resistance (AMR) genes from the assembly graph.
Author: Somayeh Kafaie
Author-Email: so.kafaie[at]gmail.com
Home-Page: https://github.com/somayeh-aut/AMR_context
License: GPLv3
Keywords: Metagenomic Assembly graph,Antimicrobial resistance,Context extraction
Classifier: Development Status :: 4 - Beta
Classifier: Environment :: Console
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Classifier: Natural Language :: English
Classifier: Operating System :: MacOS
Classifier: Operating System :: POSIX
Classifier: Operating System :: POSIX :: Linux
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Intended Audience :: Science/Research
Classifier: Intended Audience :: Healthcare Industry
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Python: >=3.6.10
Requires-Dist: biopython (>=1.72)
Requires-Dist: numpy (>=1.19.1)
Requires-Dist: dna-features-viewer (>=3.0.3)
Requires-Dist: matplotlib (>=3.3.2)
Requires-Dist: gfapy (>=1.1.0)
Requires-Dist: Bio (>=0.0.6)
Requires-Dist: Pillow (>=7.2.0)
Requires-Dist: pandas
Requires-Dist: prokka
Requires-Dist: rgi
Description-Content-Type: text/markdown
License-File: LICENSE.txt
[Description omitted; length: 13215 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.36.2)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
sarand/__init__.py sha256=o03ePGBM08W6VDzazH55VksBy831yC2UrFaUMzf4BCg 45
sarand/amr_neighborhood_in_contigs.py sha256=-BwuEtGlcjaYs3APOlP8ZZDQ2xPrXrrjhxDUEIzVDpo 13574
sarand/annotation_visualization.py sha256=6sWRCjRF4w6uxP0NZDvp_fo46uoOWHHzZNFmE8mnES0 5345
sarand/extract_neighborhood.py sha256=Stl89RMi65CpvzJeIixlh04y_NRnyE1D3ijrqjh3Gh0 84498
sarand/find_amrs_in_sample.py sha256=4tgrpdPGRCm0Dmw3C5E1gwsHmq6wSXUCJgoHHHu7H3A 14290
sarand/find_seq_in_contigs.py sha256=cxF-oBVGLiB77rJ6SXrrCsKnE_2mkMrOCy-lyjRPVgo 4578
sarand/full_pipeline.py sha256=NEYDcQjt7cH1it_ximGiDzqq85Z5pyJX8shvMpBhUc4 145895
sarand/params.py sha256=KYeRyv5mK-8J4idZX2FdKyCtNHbxmE4nKe5nf2xJxtY 4352
sarand/read_files_concatenate.py sha256=MAUXeT9mem3HTwb7aJ6Shzro-ABj8VW5k0r2jMYp4xs 1327
sarand/sarand_main.py sha256=W5ZjFXiNY6rDHnXeRwCRYAhNeLFHahvNe88TugdU3rk 4266
sarand/test_metacherchant.py sha256=1E6BKsz5FmIHsqaIjnn8jzanfk7NZrMx3aP4ChIRcfo 6339
sarand/test_spacegraphcats.py sha256=BRA-3KkZ6ZCzecqvrO6IH-my1nqOvCRzZNd6LG1COyI 8901
sarand/utils.py sha256=axU2zqiZ_2kz81gpsBjsT3IRi_XoGgy0ZbPCAH5XWqU 29548
sarand-1.0.1.data/data/data/CARD_AMR_seq.fasta sha256=ag5xLMiU2csbFHlCNgVcOHkurSuBb6WOLY40RfGX7Bs 2367289
sarand-1.0.1.data/data/test/Ecoli_NC_010488.fna sha256=4fVz-LqgWTS8le7EJT8AHlQLPbWgf_EaGRBLXf6jAvU 16978
sarand-1.0.1.data/data/test/klebsiella_NC_009650.fna sha256=3aKksYv6tcipIJi-Wl9MofXbOyLT6MezUfnZq1NAqKU 186201
sarand-1.0.1.data/data/test/staphylo_NC_002758.fna sha256=P_DniNEf28jWRV9jHC_QuHVSLeXaLNns2oBD4hQLfL4 419968
sarand-1.0.1.dist-info/LICENSE.txt sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY 35149
sarand-1.0.1.dist-info/METADATA sha256=-Uuf8TNIv6hC9J2kzuxKRNGKKjb07j8CPQQts7rg4Ss 14735
sarand-1.0.1.dist-info/WHEEL sha256=OqRkF0eY5GHssMorFjlbTIq072vpHpF60fIQA6lS9xA 92
sarand-1.0.1.dist-info/entry_points.txt sha256=nxoMZd-vmOQWDV0YMpPrOmrqLk02Kep4BGFEsaSJbRg 52
sarand-1.0.1.dist-info/top_level.txt sha256=Q8R8HE-Z_JBPvqEmS5pvgc4OE3B56oN7on79ZtD21eI 7
sarand-1.0.1.dist-info/zip-safe sha256=AbpHGcgLb-kRsJGnwFEktk7uzpZOCcBY74-YBdrKVGs 1
sarand-1.0.1.dist-info/RECORD — —

top_level.txt

sarand

entry_points.txt

[console_scripts]
sarand = sarand.sarand_main:main

zip-safe