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3.0.4 rpbp-3.0.4-py3-none-any.whl

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Project: rpbp
Version: 3.0.4
Filename: rpbp-3.0.4-py3-none-any.whl
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Size: 424969
MD5: 64a815e9d005c5d6bdc61e2a7a660549
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Uploaded: 2024-03-14 11:05:09 +0000

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METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt

METADATA

Metadata-Version: 2.1
Name: rpbp
Version: 3.0.4
Summary: Rp-Bp: Ribosome Profiling with Bayesian Predictions
Author: Brandon Malone
Maintainer-Email: Etienne Boileau <boileau[at]uni-heidelberg.de>
Project-Url: Github, https://github.com/dieterich-lab/rp-bp
Project-Url: Issues, https://github.com/dieterich-lab/rp-bp/issues
License: MIT
Keywords: bioinformatics,riboseq,open reading frame discovery,translation
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: MacOS :: MacOS X
Classifier: Operating System :: POSIX :: Linux
Classifier: Programming Language :: Python :: 3 :: Only
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Requires-Python: <3.11,>=3.7
Requires-Dist: pbiotools (>=4.0.2)
Requires-Dist: appdirs
Requires-Dist: biopython
Requires-Dist: cmdstanpy
Requires-Dist: dash
Requires-Dist: dash-bio
Requires-Dist: dash-bootstrap-components
Requires-Dist: statsmodels
Requires-Dist: ipykernel; extra == "docs"
Requires-Dist: matplotlib; extra == "docs"
Requires-Dist: nbsphinx; extra == "docs"
Requires-Dist: pandoc; extra == "docs"
Requires-Dist: sphinx (>=4.5.0); extra == "docs"
Requires-Dist: sphinx-rtd-theme (>=1.0.0); extra == "docs"
Requires-Dist: furo; extra == "docs"
Requires-Dist: sphinx-argparse; extra == "docs"
Requires-Dist: sphinx-copybutton; extra == "docs"
Requires-Dist: pytest; extra == "tests"
Requires-Dist: pytest-cov; extra == "tests"
Requires-Dist: pytest-depends; extra == "tests"
Provides-Extra: docs
Provides-Extra: tests
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 2506 characters]

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rpbp-3.0.4.dist-info/RECORD — —

top_level.txt

rpbp

entry_points.txt

[console_scripts]
collect-read-length-orf-profiles = rpbp.analysis.profile_construction.collect_read_length_orf_profiles:main
compile-rpbp-models = rpbp.ribo_utils.compile_rpbp_models:main
create-base-genome-profile = rpbp.orf_profile_construction.create_base_genome_profile:main
create-orf-profiles = rpbp.orf_profile_construction.create_orf_profiles:main
create-read-length-orf-profiles = rpbp.analysis.profile_construction.create_read_length_orf_profiles:main
estimate-metagene-profile-bayes-factors = rpbp.orf_profile_construction.estimate_metagene_profile_bayes_factors:main
estimate-orf-bayes-factors = rpbp.translation_prediction.estimate_orf_bayes_factors:main
extract-metagene-profiles = rpbp.orf_profile_construction.extract_metagene_profiles:main
extract-orf-coordinates = rpbp.reference_preprocessing.extract_orf_coordinates:main
extract-orf-profiles = rpbp.orf_profile_construction.extract_orf_profiles:main
filter-nonunique-peptide-matches = rpbp.analysis.proteomics.filter_nonunique_peptide_matches:main
get-all-orf-peptide-matches = rpbp.analysis.proteomics.get_all_orf_peptide_matches:main
get-all-read-filtering-counts = rpbp.analysis.profile_construction.get_all_read_filtering_counts:main
get-orf-peptide-matches = rpbp.analysis.proteomics.get_orf_peptide_matches:main
label-orfs = rpbp.reference_preprocessing.label_orfs:main
merge-replicate-orf-profiles = rpbp.translation_prediction.merge_replicate_orf_profiles:main
predict-translated-orfs = rpbp.translation_prediction.predict_translated_orfs:main
prepare-rpbp-genome = rpbp.reference_preprocessing.prepare_rpbp_genome:main
rpbp-predictions-dashboard = rpbp.analysis.rpbp_predictions.dashboard.rpbp_predictions_dashboard:main
rpbp-profile-construction-dashboard = rpbp.analysis.profile_construction.dashboard.rpbp_profile_construction_dashboard:main
run-all-rpbp-instances = rpbp.run_all_rpbp_instances:main
run-rpbp-pipeline = rpbp.run_rpbp_pipeline:main
select-final-prediction-set = rpbp.translation_prediction.select_final_prediction_set:main
select-periodic-offsets = rpbp.orf_profile_construction.select_periodic_offsets:main
summarize-rpbp-predictions = rpbp.analysis.rpbp_predictions.summarize_rpbp_predictions:main
summarize-rpbp-profile-construction = rpbp.analysis.profile_construction.summarize_rpbp_profile_construction:main
visualize-metagene-profile-bayes-factor = rpbp.analysis.profile_construction.visualize_metagene_profile_bayes_factor:main
visualize-orf-type-metagene-profiles = rpbp.analysis.rpbp_predictions.visualize_orf_type_metagene_profiles:main