Wheelodex » Projects » RiboParser

RiboParser

View on PyPI — Reverse Dependencies (0)

0.1.6.1 RiboParser-0.1.6.1-py3-none-any.whl

Wheel Details

Project: RiboParser
Version: 0.1.6.1
Filename: RiboParser-0.1.6.1-py3-none-any.whl
Download: [link]
Size: 209513
MD5: 231f63fac1f873e84cb07043b19fb6d3
SHA256: cbcac20607428d1b733f2b59375c464d34c2ef37ca7ddd192463ac6fd6850309
Uploaded: 2024-11-15 09:33:47 +0000

dist-info

METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt

METADATA

Metadata-Version: 2.1
Name: RiboParser
Version: 0.1.6.1
Summary: A pipeline for ribosome profiling data analysis
Author: Ren Shuchao
Author-Email: rensc0718[at]163.com
Home-Page: https://github.com/renscq/RiboParser
License: GPL
Classifier: Programming Language :: Python :: 3.12
Classifier: Operating System :: POSIX :: Linux
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Intended Audience :: Science/Research
Platform: linux-x86_64
Requires-Python: >=3.12
Requires-Dist: numpy (~=1.26.4)
Requires-Dist: pandas (~=2.2.2)
Requires-Dist: pyarrow (~=16.1.0)
Requires-Dist: polars (~=0.20.31)
Requires-Dist: biopython (~=1.78)
Requires-Dist: scipy (~=1.12.0)
Requires-Dist: scikit-learn (~=1.4.2)
Requires-Dist: statsmodels (~=0.14.2)
Requires-Dist: pysam (~=0.22.1)
Requires-Dist: joblib (~=1.4.2)
Requires-Dist: interval (~=1.0.0)
Requires-Dist: matplotlib (~=3.8.4)
Requires-Dist: matplotlib-venn (~=1.1.1)
Requires-Dist: seaborn (~=0.13.2)
Requires-Dist: plotly (~=5.22.0)
Requires-Dist: seqlogo (~=5.29.9)
Requires-Dist: kaleido (~=0.2.1)
Description-Content-Type: text/markdown
[Description omitted; length: 37267 characters]

WHEEL

Wheel-Version: 1.0
Generator: setuptools (70.1.1)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
scripts/__init__.py sha256=prN_GhCvSEZP_6ecDeq03FWXkobFuMaDnr5whqENEZM 203
scripts/bedgraph/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
scripts/bedgraph/bg2meta.py sha256=-iPb-EyUVCcZF22LHoYl00bbNqGhk6eXSlE1BYSFixo 2590
scripts/bedgraph/rpm_smooth.py sha256=fo8yUummfP3RqD66tD2UaIyBq8ZhpvwvZoEpaXLov1I 7931
scripts/bowtie/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
scripts/bowtie/merge_bwt_log.py sha256=Gmyxmx875DqXyrtlLLSiKtUl4j4AAjaHhni-wNZPSMQ 5005
scripts/fasta/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
scripts/fasta/fa_gc_sum.py sha256=S37xU7Tjazvlm9w2b4fOC1CrtmL3QkO2cPJnYM5t46k 2531
scripts/fasta/fa_len_flt.py sha256=aldeiJZ9YlzizwI9zbQOI4kZWkcgcnIafXrfOOUa3I0 2637
scripts/fasta/fa_len_sum.py sha256=ml1mqMLiEdvpAFvBJgn0zQdl0-WbVW6MPR3hwheht2w 2927
scripts/fasta/fa_split.py sha256=CZuPVChlVmGBPP0DjPJmvu_vq7hRolCjA8V608TNitk 2675
scripts/fasta/line_feed.py sha256=BijpWgouE_1FwQsE6SzpOPM0YjmubomRBH_eLCfpQ4w 1982
scripts/fasta/nt2aa.py sha256=S-_IE665Nge_DMpd3YydvvKecW-M9jLPUO6yrLqe3K0 5112
scripts/fasta/rand_seq.py sha256=tBWLxv2MupxzDrhDnzlVsaLoZhRm75JfZ8UgWa5Dn3E 2924
scripts/fasta/retrieve_seq.py sha256=fN6OrdQhOpI84IGenfoUF-tcGnxK7BFO59yZtlpy68k 2406
scripts/fasta/revs.py sha256=-aw_de1n1tb5lD38CBMajTp2orGCuxsxAv1FBxz6C6E 1923
scripts/fastq/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
scripts/fastq/fq2fa.py sha256=fQTyDTCGEbz0YFyZ-1tOWGJXsVOgo3KfwgUcpmfPmSU 2129
scripts/fastq/fq2txt.py sha256=wyzyz6I2ESObeZcP-Al5hUlqCh8kR4LX3Hj7Hb9vjbg 1615
scripts/fastq/fq_len_flt.py sha256=oakbA3hJzTeNCSizyib3XkTV3UpylWAoyfMmT-NgA0E 2275
scripts/fastq/fq_len_sum.py sha256=4TwEuAiPrB8yfz51X3WokdE66WNu6fLYN8dfwfvhBWk 2160
scripts/fastq/fq_split.py sha256=vM7lbSkYQYLT2f-mdv5iyonsme-aGH7HizMnsxgYaw4 2498
scripts/fastq/fq_trim.py sha256=yyvI5uJigTEVDjuLwPL-RcRrdqMZ4dkl1ovlrtqP4II 2432
scripts/fastq/phred_quality.py sha256=i_KqtKrAflvJY91W_1R1nXdcxuwra42xM8sJf1UH34E 2686
scripts/merge_ribo/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
scripts/merge_ribo/merge_cdt.py sha256=Zal0DBUzlW0aDU7vm2FQWEfbf9RIupjnDlczySWGCH8 2942
scripts/merge_ribo/merge_coverage.py sha256=dk-Ss6-aN0SSMc5X6mzoiAnUN5O-JwOTogsMIX0BJL8 2364
scripts/merge_ribo/merge_cst.py sha256=GbHjqaPqbooaRy8hkbxVuMjz1HnJ79eCr4nRCtAEwDA 2814
scripts/merge_ribo/merge_digestion.py sha256=PX31VBB-kD-ebF3NmRqPl5APpQmijnbSFekQoGuhPnk 3367
scripts/merge_ribo/merge_dst_list.py sha256=D_bk79Cz9kwVOAGp7VnkG7e55omOMLaal65kmoBEv6c 3143
scripts/merge_ribo/merge_length.py sha256=vMPPjGDLmscG_9A60m5UASe0hzW2mWvOuH1gnUfbQRQ 3392
scripts/merge_ribo/merge_metagene.py sha256=85_DD2zVCd3KuR66oZdfK2RbWTY-R6_Wkiy1-thNRzg 2419
scripts/merge_ribo/merge_occupancy.py sha256=5Gmr9cJD6is-IxfMhLuFOX6LiLoLvJt-6-tuxvHAqtI 3151
scripts/merge_ribo/merge_odd_ratio.py sha256=LDcDfPXO0X4QaIzY1mgRBGBu5mBSL_IXLzBhgObShrw 2521
scripts/merge_ribo/merge_offset.py sha256=zYFoFiAUeRsYlcX2aiZPaZlyIKk52lByQ7q1ISISAFs 3451
scripts/merge_ribo/merge_offset_detail.py sha256=FT6mio94aWm4jRknSrPtKKZZM-SfTDZNiIzfRYwqwnQ 5325
scripts/merge_ribo/merge_offset_end.py sha256=FRfXz2SImLEBjNFFGh4fL_RECijtGjZ_ZBj7_mH0kkQ 4251
scripts/merge_ribo/merge_pausing.py sha256=oM8ItxlywfQolyAcsNLmx_-Y_aEDy8X1O9gOZvbSKk8 3547
scripts/merge_ribo/merge_period.py sha256=fS798BC9z9qL5LuEzG-AolrZzJhBCf1xya1WjbojssM 2423
scripts/merge_ribo/merge_quant.py sha256=m25rvBUKDdUtyQ2gHylShZlr2TP-w803PwyFpATK-Cs 2224
scripts/merge_ribo/merge_saturation.py sha256=i8hpdh1KTY8JHJ9gfcgdVRzHo64MGVOpX3bOp5_siK0 2912
scripts/oligo/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
scripts/oligo/get_overlap_seq.py sha256=7TlHc5F04ZNzBDEkgeH6L-nz_sEI7sOnnaESpoBG2o0 2410
scripts/oligo/get_tissue_freq.py sha256=ckJ5N29aA1VJp7qIU7DZOrGPWnXCrM9G9UoXJ1Z2dbc 4243
scripts/oligo/get_win_seq.py sha256=Cfkeh3i4vKWWljKuxJ-3X-_Ub_zgP0zuMEA11RnwH6A 1521
scripts/ribocode/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
scripts/ribocode/ribocode_bed_format.py sha256=4tS7biGkSo35zuFprhOCuIztcZcNykraSlhImYG3olw 7756
scripts/ribotish/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
scripts/ribotish/ribotish_format.py sha256=Ez9XjBc2BlrP5RRnKhUihaT3Aedii3digsizLAv18RY 10957
scripts/rsem/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
scripts/rsem/merge_rsem.py sha256=dnp73VOGcWjLpNiQkmDlLe35V-pOdqjnnI22p5J3wUk 2070
scripts/unix/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
scripts/unix/dos2unix.py sha256=q7nubNPSiVfn8KOOivTnyJajxkJvrRT6dZUjEVCcVvM 1247
utils/__init__.py sha256=prN_GhCvSEZP_6ecDeq03FWXkobFuMaDnr5whqENEZM 203
utils/make_ensb_ref.py sha256=cwWhfELWLZ4hF64aB35b7f2VQ2kFJIdZcfV6t-Onpow 11891
utils/make_ribo_ref.py sha256=tc7p1cugYVUXlOSC8-1_Z27hcEGC3zGKlqvXF4dpIZE 934
utils/ribo_parser.py sha256=GGXLxN1tKvsFsDPsscU124fWBROLX-u3WnkpTn2I2bA 3216
utils/rna_Density.py sha256=kYv5Ia2ceTfjKfXUjpJSqAuGyYS6nbr-Vce25mGRBqw 1001
utils/rna_Offset.py sha256=sfM69QwGJAJ8B5Iz36JVe37YZzqWT8Z8HNAUKHz7F0o 1282
utils/rpf_Bam2bw.py sha256=jR2WroxPJ2xijb8lBLqyYLGoxRoYBgLajNoPdS1gz2E 996
utils/rpf_Bam_Filter.py sha256=KlwHSnUUMAzRqAte7tvjgoQdlyoHmkXHPcbl97L84zI 625
utils/rpf_CDT.py sha256=mJT12DH7i1vEpsEKx1dZSzBaBwOfGczXTowNeC9dusg 984
utils/rpf_CST.py sha256=x6Rwv9Hl3Vw2H9BOrarlYempByGxxxB5vCmoJbtqTr8 1055
utils/rpf_Check.py sha256=zyEJKIJsE0sRaa5uo_rfIpSyoK-crUfUGXcoeESudIU 1549
utils/rpf_CoV.py sha256=2p_-piUwruRiW3rRH1iV7LgLB0BzdKRWID-jiFMEvYU 1032
utils/rpf_Corr.py sha256=vVE-xLx1C5WRqCRjlviKdTcmvBYBe9vkvFumGKVsC-A 6274
utils/rpf_Coverage.py sha256=mxLo8sEl0LQw0UK8bno9cl-la_-BKnzNsRXRWBMgpt0 1074
utils/rpf_Cumulative_CoV.py sha256=YJiMZCrx4mFk5kNktS0_r9s7h9Jfmg5AWi1OFTxVskY 992
utils/rpf_Density.py sha256=_KuT1TM5mje9LGC6DZU18GYq-CEwc8QFvsCzLsvwQTI 981
utils/rpf_Digest.py sha256=emetoAB4N4UW9jdyPmshaOLFSSr2230c8R6siRO8ryE 1006
utils/rpf_Geneplot.py sha256=KMbutxS-yZDjMT7IO3Kldwex_ZrDuugAt_7KnQEqikk 5932
utils/rpf_Merge.py sha256=MHpuE6G56PV-vhyopokBTKD0tzgr3DETi6XM4UCzHOI 2079
utils/rpf_Meta_Codon.py sha256=AlRZS_hdLBg_hj7FTdgDKpUmZkXHdPGmBI2bptmoR8w 1123
utils/rpf_Metaplot.py sha256=tHijE0rWGjSNPwVrmhipXAK-LBTQwmUTeGAmuPaF7SM 804
utils/rpf_Occupancy.py sha256=BlPgfrDWT8LQds63_9YJlnl4Vt1-k4_IMiOAJHq0Q8E 947
utils/rpf_Odd_Ratio.py sha256=a7aF9wzb48ZeibWYosILkaV8_M3ZkfFtoXxkGGn64Lk 1158
utils/rpf_Offset.py sha256=BTcjUEr2ylAx4YfUyisgpb6wDx7b-Iio3jL2CHwTr78 1563
utils/rpf_Offset_RSBM.py sha256=IfietEwCJQSolR2HEKS7rilE_ZDLdhlLOtNu4n4FJlU 1120
utils/rpf_Pausing.py sha256=mTGwu5_Pb__3bddEdrfRzEKClKKXCwX_v3JScHqxFAY 1443
utils/rpf_Periodicity.py sha256=fqGVHRj25ASPqfhQK-sWAc5nPSr82fptaDMNqoblCYI 902
utils/rpf_Quant.py sha256=EU7YbcPtrru90rDm3PWrgZ30L1X-KC3FmOfxDKbogQw 1128
utils/rpf_Reference.py sha256=tc7p1cugYVUXlOSC8-1_Z27hcEGC3zGKlqvXF4dpIZE 934
utils/rpf_Retrieve.py sha256=nzY1xWKtLmO7rgORCHQAmTM87WIU1mvmpUM2tykLwXE 859
utils/rpf_Shuffle.py sha256=SGYeu5fhpMLrayJJ8dWXdaAK2lFWuvb4k_lsSQ9u980 698
utils/rpf_end.py sha256=KG4YxWKBp_bMARgmOVN4fu8g4xt6dLZePrO3T5UYunc 7520
utils/serp_overlap.py sha256=hmfc93mmDl69TtiCb0zBPXfIWKdTXO8WqDGbY9_f_R4 4929
utils/serp_peak.py sha256=CbnZa6piMcnPwT3UZB7UhuuXmuXTKuiXcdBLlDo57M4 826
utils/serp_properties.py sha256=am0DgIc8e5VmG6iUcAuCooFvCnvhGLQzeuYRrkqkXX0 922
utils/ribo/ArgsParser.py sha256=xyzdjyjM4d4Nc7V0_bmoxfuoXJJapg2Q81ivWQKWNQY 78346
utils/ribo/Bam2Wig.py sha256=dAzAVWDpF7SBGYIrOg6__k3FTPtx6PY33Ue-2NX2gs8 10057
utils/ribo/BamFilter.py sha256=P7k9ybX2xInidvFm7V-68mf34rEXld6Weis-FdTio5Q 2220
utils/ribo/CDT.py sha256=QO1IEMLJJhO0iyeZ7vdNhUn8RWFwTQvglRrdmU__qLI 10947
utils/ribo/CST.py sha256=Y5tB4PR1dBrS6VQcu66Eayb-FUrKNDPA8IzY2NQnMTo 29388
utils/ribo/Codon.py sha256=i-jX5g79Uytn7GdbGkzra8nZ0tXSDaQq9QcviBcTzDM 8016
utils/ribo/Coefficient_of_Variation.py sha256=T0BkieCQYgPus4CQNdZDR3we8JcQnw6S6IsxT1S_Oe0 13439
utils/ribo/Coverage.py sha256=2y7UN70nmtf-gOkwkz9MjFNjeoGy2s0HVzmANSyW7u0 17401
utils/ribo/Cumulative_CoV.py sha256=cr-o0ddGECsFRkMx7gRcZ8R2xzq9SeD6k780geS1xx0 8548
utils/ribo/Density.py sha256=2UxuwWhDQaCw7u8MVi5alFfrKs0JDfrDbvZsweZ7n4c 10254
utils/ribo/Digestion.py sha256=hoqxFVeY-GsX5qO_9uGurbnvhVe018peE8rQXoPPG4Y 12516
utils/ribo/Ensembl_Ref.py sha256=rTRpyPjOfd3uf_JlwR9fhGo6m20E3M3H-sH53ZLrpTM 10233
utils/ribo/GenePred.py sha256=2U476VC_Hpoik3YH0C1CTIwx8pyxIcY2-lAjnoLvpMk 22424
utils/ribo/MetaCodon.py sha256=wk_yW8kJRx1Qf0MYZ31RXmx0k5Yxq3_eHBc0BSBJQyA 17049
utils/ribo/Metaplot.py sha256=tsgdOp84lubj4wGnV7FYlM54HDGX5sqQTtnyViokDJU 12486
utils/ribo/Occupancy.py sha256=u48L_FqFHb9G0jSBBG90giWlO09djwra6QKYrpfqZH4 11641
utils/ribo/Odd_Ratio.py sha256=2E890GjJMG1cyTWK5DPoVSywj2UQvSezY38Y1hlMwZY 24455
utils/ribo/Offset.py sha256=48Ejb8khIqNwnVL254CVQFsEZxH_WJqD165dyuQjKUg 28178
utils/ribo/Offset_RSBM.py sha256=2UzboCbww8DYe1BpT75zUqG2JFWJXRilPjETFtxcF68 29576
utils/ribo/Pausing.py sha256=rzc3rZPvwjj3bLBp0IAEZBetM7R_tv2y8DXvTcnWM0I 19227
utils/ribo/Periodicity.py sha256=UTNEGRTacbvsJTLw8Hp2rUrL9-JU75BRiH0qckMavZ4 5801
utils/ribo/Quality.py sha256=a_VbvGtENYqjwut8BKwuC9QicJP4sV1qXHiv12H2Su8 28711
utils/ribo/Quant.py sha256=Yb3ehXiPUb1ge7xPQMsw-O7HozyVYsa7uVbcM14h7DA 14736
utils/ribo/RNA.py sha256=nSff7ZZINaz0QC0Da7sXdxzv0THXkPa_Jc4VQpq-uAw 15359
utils/ribo/RPFs.py sha256=4R_DzWxlxGRTKjRk5Uv9Netqwgd7FYc1h7NMjFGSp88 11627
utils/ribo/Retrieve.py sha256=51n9O8PdYpHnSaU97DQqwWs_DGSaIUzMSUobCPjh9IE 5528
utils/ribo/Ribo.py sha256=y-cwKSPjYEaoJaVTpOjXyc6NomiZcbnCHhLWMugxLss 20383
utils/ribo/Shuffle.py sha256=ZAqlSKpFbqtRsS5ungFsfabNlR8sKtUgrNjfJwrYy84 5884
utils/ribo/__init__.py sha256=cASDWvBo3w5PCMWBlO8pGppzhPPnmpE65TduGUNj764 148
utils/serp/Properties.py sha256=HEJn0CrWVIfxCSsgDG9kXZzxOLoo0yLuxGdRzwXz6w4 11482
utils/serp/SeRP.py sha256=0INLUofiF7Oe3rUn-aSjdOuJKxJSl29rhyTYK7LG7Z8 68232
utils/serp/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
RiboParser-0.1.6.1.dist-info/METADATA sha256=SpvkjN_6RFvpPpCjDFhBZqau-CK5HDX6aiECr9wnVW0 38927
RiboParser-0.1.6.1.dist-info/WHEEL sha256=mguMlWGMX-VHnMpKOjjQidIo1ssRlCFu4a4mBpz1s2M 91
RiboParser-0.1.6.1.dist-info/entry_points.txt sha256=204oXsakjR7q5toYp8fO5_gsjB7AGqykzF3qbCPT5Gk 3003
RiboParser-0.1.6.1.dist-info/top_level.txt sha256=8cdX_hVqruIeGLHA86glqrQnHd0I6FbaZMdWWyb2UZI 14
RiboParser-0.1.6.1.dist-info/RECORD — —

top_level.txt

scripts
utils

entry_points.txt

[console_scripts]
bg2meta = scripts.bedgraph.bg2meta:main
dos2unix = scripts.unix.dos2unix:main
fa_gc_sum = scripts.fasta.fa_gc_sum:main
fa_len_flt = scripts.fasta.fa_len_flt:main
fa_len_sum = scripts.fasta.fa_len_sum:main
fa_split = scripts.fasta.fa_split:main
fq2fa = scripts.fastq.fq2fa:main
fq2txt = scripts.fastq.fq2txt:main
fq_len_flt = scripts.fastq.fq_len_flt:main
fq_len_sum = scripts.fastq.fq_len_sum:main
fq_split = scripts.fastq.fq_split:main
fq_trim = scripts.fastq.fq_trim:main
get_overlap_seq = scripts.oligo.get_overlap_seq:main
get_tissue_freq = scripts.oligo.get_tissue_freq:main
get_win_seq = scripts.oligo.get_win_seq:main
line_feed = scripts.fasta.line_feed:main
merge_bwt_log = scripts.bowtie.merge_bwt_log:main
merge_cdt = scripts.merge_ribo.merge_cdt:main
merge_coverage = scripts.merge_ribo.merge_coverage:main
merge_cst = scripts.merge_ribo.merge_cst:main
merge_digestion = scripts.merge_ribo.merge_digestion:main
merge_dst_list = scripts.merge_ribo.merge_dst_list:main
merge_length = scripts.merge_ribo.merge_length:main
merge_metagene = scripts.merge_ribo.merge_metagene:main
merge_occupancy = scripts.merge_ribo.merge_occupancy:main
merge_odd_ratio = scripts.merge_ribo.merge_odd_ratio:main
merge_offset = scripts.merge_ribo.merge_offset:main
merge_offset_detail = scripts.merge_ribo.merge_offset_detail:main
merge_pausing = scripts.merge_ribo.merge_pausing:main
merge_period = scripts.merge_ribo.merge_period:main
merge_quant = scripts.merge_ribo.merge_quant:main
merge_rsem = scripts.rsem.merge_rsem:main
merge_saturation = scripts.merge_ribo.merge_saturation:main
nt2aa = scripts.fasta.nt2aa:main
phred_quality = scripts.fastq.phred_quality:main
rand_seq = scripts.fasta.rand_seq:main
retrieve_seq = scripts.fasta.retrieve_seq:main
revs = scripts.fasta.revs:main
ribocode_bed_format = scripts.ribocode.ribocode_bed_format:main
ribotish_format = scripts.ribotish.ribotish_format:main
rna_Density = utils.rna_Density:main
rna_Offset = utils.rna_Offset:main
rpf_Bam2bw = utils.rpf_Bam2bw:main
rpf_CDT = utils.rpf_CDT:main
rpf_CST = utils.rpf_CST:main
rpf_Check = utils.rpf_Check:main
rpf_CoV = utils.rpf_CoV:main
rpf_Corr = utils.rpf_Corr:main
rpf_Coverage = utils.rpf_Coverage:main
rpf_Cumulative_CoV = utils.rpf_Cumulative_CoV:main
rpf_Density = utils.rpf_Density:main
rpf_Digest = utils.rpf_Digest:main
rpf_Geneplot = utils.rpf_Geneplot:main
rpf_Merge = utils.rpf_Merge:main
rpf_Metaplot = utils.rpf_Metaplot:main
rpf_Occupancy = utils.rpf_Occupancy:main
rpf_Odd_Ratio = utils.rpf_Odd_Ratio:main
rpf_Offset = utils.rpf_Offset:main
rpf_Offset_RSBM = utils.rpf_Offset_RSBM:main
rpf_Pausing = utils.rpf_Pausing:main
rpf_Periodicity = utils.rpf_Periodicity:main
rpf_Quant = utils.rpf_Quant:main
rpf_Reference = utils.rpf_Reference:main
rpf_Retrieve = utils.rpf_Retrieve:main
rpf_Shuffle = utils.rpf_Shuffle:main
rpm_smooth = scripts.bedgraph.rpm_smooth:main
serp_overlap = utils.serp_overlap:main
serp_peak = utils.serp_peak:main
serp_properties = utils.serp_properties:main