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RiboMiner

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0.2.3.2.1 RiboMiner-0.2.3.2.1-py3-none-any.whl

Wheel Details

Project: RiboMiner
Version: 0.2.3.2.1
Filename: RiboMiner-0.2.3.2.1-py3-none-any.whl
Download: [link]
Size: 143796
MD5: 06578da6199196f71d9d890986c48987
SHA256: 906df2be7688dd6b8d5f71f69bd53b7441b150ec03724be1c47880d89be5f1a5
Uploaded: 2021-12-29 10:12:40 +0000

dist-info

METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt

METADATA

Metadata-Version: 2.1
Name: RiboMiner
Version: 0.2.3.2.1
Summary: A python toolset for mining multi-dimensional features of the translatome with ribosome profiling data
Author: Li Fajin
Author-Email: sherkinglee[at]gmail.com
Home-Page: https://github.com/xryanglab/RiboMiner
License: GPLv3.0
Keywords: Analysis for ribosome profiling data.
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Environment :: Console
Classifier: Programming Language :: Python :: 3
Classifier: Operating System :: Unix
Requires-Python: >=3.6
Requires-Dist: matplotlib (>=2.1.0)
Requires-Dist: numpy (>=1.16.4)
Requires-Dist: pandas (>=0.24.2)
Requires-Dist: pysam (>=0.15.2)
Requires-Dist: scipy (>=1.1.0)
Requires-Dist: seaborn (>=0.8.1)
Requires-Dist: biopython (>=1.70)
Requires-Dist: HTSeq
Requires-Dist: RiboCode (>=1.2.10)
Requires-Dist: pysamstats
Description-Content-Type: text/markdown
[Description omitted; length: 39464 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.35.1)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
RiboMiner/CoverageOfEachTrans.py sha256=Pdqxe3SL8kaz_lF8BG7HeEvBv6BL2lisrBsFOSHxOOg 9662
RiboMiner/EnrichmentAnalysis.py sha256=4xQhg9xJRHaaafghoDVYnHbobCwc4jC_0zNK0Po1KCg 14610
RiboMiner/EnrichmentAnalysisForSingleTrans.py sha256=X5bUxf5jepjaYgwBbX7Lv07Q6g3M0rGETzuJpS1OyrA 8374
RiboMiner/ExtractSequenceCenteredOnAPosition.py sha256=946p9Y_xcahiZ8sUtsX5oH6p1y0QYJjRQWvQkcu3vkw 3596
RiboMiner/FunctionDefinition.py sha256=0fwBC-rd_zW7aWMGPaND4-NK2cYRzhguAMz8Zu7TD6U 71722
RiboMiner/GCContent.py sha256=KJjaSb9oK_iVk5z31Sn4rY7ML275lOmriJD_pNyni7A 4759
RiboMiner/GetProteinCodingSequence.py sha256=_EID-gzgCkLq-l-NjAFD91YzO6bsDHYvW1UUkI2wVKI 6674
RiboMiner/GetUTRSequences.py sha256=GMBJValYngHSqhDPgWjkyxKCepCfO9loVCOZ6_aXtpQ 2919
RiboMiner/LengthDistribution.py sha256=VxIkABHep1SQAXwJA7U6kqiil9izEd4zVOkWC_l-hqg 4309
RiboMiner/MergeSampleDensitys.py sha256=STSfFqUngldKZ1J8-aG6nn-zzKUj5x4BBBPsn9yKnyM 1387
RiboMiner/MetageneAnalysis.py sha256=9KoqDY-HANYwNv9JR5REMesiVBAfrj4PiC9gAXlxLxY 23346
RiboMiner/MetageneAnalysisForTheWholeRegions.py sha256=PqqL8SEwC41FMXhzAKcDphAv4lJf-DSLtHHPsud4jlQ 13411
RiboMiner/ModifyHTseq.py sha256=XoUoz420Y7cec00R0aJ02TotLiNI2RWdDGSJY1duWbM 7324
RiboMiner/OutputTranscriptInfo.py sha256=HG2Almjlhwm6p2YTbN8eM2yo5LN8EVOUkvFOxMVXTJQ 1988
RiboMiner/PausingScore.py sha256=cnh1WMj7ldW9fo58UaJNXJDcirlFKhe-cqQltpxiFho 11130
RiboMiner/Periodicity.py sha256=hmpKCiLNZ0tdiISjYekTtCp9snAKGvtzk4tOZxnzqH4 8307
RiboMiner/PlotEnrichmentRatio.py sha256=wR77otoH35O1HWuQOKbjqzyUbT6lyTXk2QtLRZPpjYs 16762
RiboMiner/PlotGCContent.py sha256=sFx-12DPIAljIjzUDUjK6eaEx7T3TL6v3--ZgN8Dz6Q 3460
RiboMiner/PlotHydropathyCharge.py sha256=7RzRwky4U-W4yq9qXHg_qlUYJQlHav2MjziZe-Jf2eA 19400
RiboMiner/PlotMetageneAnalysis.py sha256=o1WuuNLeyaMNrNPgT2DlI9BI_EjfF_njorBk11JGvzo 15676
RiboMiner/PlotMetageneAnalysisForTheWholeRegions.py sha256=fTjkdsScjbidt2bqTfkaDnBo5BKDBfrBSHfEicKE17k 9100
RiboMiner/PlotPolarity.py sha256=QIMmZlKYpsaJB2r3_RPz8XbUR4dJtjf_IZDowj6I9fI 6291
RiboMiner/PlotRiboDensityAroundTriAAMotifs.py sha256=Ao4IA4fRPCtoHECmiPOiHBGFJRvx_yVoIESCtNzRkjc 7934
RiboMiner/PlotRiboDensityAtEachKindAAOrCodon.py sha256=qpgZxjfwBPh4zbaoDd02zNh7nbO_WDpNW-q5iSkJxJA 13213
RiboMiner/PlotTransCoverage.py sha256=F3TXm0wP5lLjKl39eRBsngkiFCu-8JRoTX8bPBJwwGA 16248
RiboMiner/PolarityCalculation.py sha256=YUS-X83EpV3r8cDYrsbg6bPN1EBROJGWrA_T-e5Ek1g 7772
RiboMiner/ProcessPausingScore.py sha256=CyBCDGCFNha4RI0aB0l-yiBV4EuDxgnnh7CBYGguwvM 7392
RiboMiner/RPFdist.py sha256=N0cO_6DrxifYyGDBhjSq56UFMFYs-wpTaxnqD_yn7p4 8154
RiboMiner/ReadsLengthOfSpecificRegions.py sha256=JZizJdFRJMnDiNFrx0qZOQPbDKSPaWO3Fro2GmqTyDQ 8067
RiboMiner/RiboDensityAroundTripleteAAMotifs.py sha256=wMe_ygQG92uyk_zl9V3bwGTH8EITgbGc9RKWCm4Mms4 22962
RiboMiner/RiboDensityAtEachKindAAOrCodon.py sha256=hfjVfFbiSeKVwJajBNLIcR908FWs0yFV5L_0wzeiEAE 15226
RiboMiner/RiboDensityAtEachPosition.py sha256=Foucg9Vgt5d48qriI0mU_2qT8UcuX-JB3ujg7e0ahLo 6303
RiboMiner/RiboDensityForSpecificRegion.py sha256=4-EPCVRmJq1XKNb_kUN-hApsYw5AEy-R-mWbFwq2pUc 8511
RiboMiner/RiboDensityOfDiffFrames.py sha256=qQsLsF7RDi-ipPHoGIfyLcq51Mt12_jFftfITZtGf_o 7663
RiboMiner/StatisticReadsOnDNAsContam.py sha256=nYKquqxnRcQf_CXAqUkxx8vWLeB2dbw8ku2mklCv92w 5560
RiboMiner/__init__.py sha256=3evNLD7YmLydD-6XyJR1Zu3zNYk6spc7vTSEXXHceNk 97
RiboMiner/cAI.py sha256=jy4B-hadAtnwCVGu3i7oQ3WQNghj0rHKchMyTzLdhv8 13322
RiboMiner/cAIPlot.py sha256=9BgEMODZLyMYpqZUt8HPMVUA6AWD3NK46pikuhWvXo8 11621
RiboMiner/enrichmentMeanDensity.py sha256=liTdp9hXIHJzUsqxUnmUM3PmsfwYdtupsFQdiV5CDqA 2386
RiboMiner/hydropathyCharge.py sha256=g3y3e0yq8xLDzVTaBpfZ3y-Z9Nw7r1VjxegUaTzd7YE 5546
RiboMiner/tAI.py sha256=EeXlL8j7wE_8WRs-L0S_KTVC4_AyUw970N_EX48QRRw 11361
RiboMiner/tAIPlot.py sha256=w-QEU_1orBBUM3s784OX8xBOzkEL97PsyC1UFF-qOy0 11621
RiboMiner-0.2.3.2.1.dist-info/LICENSE sha256=IwGE9guuL-ryRPEKi6wFPI_zOhg7zDZbTYuHbSt_SAk 35823
RiboMiner-0.2.3.2.1.dist-info/METADATA sha256=JZjYtB1atOwORZJtK3k380GofrKipXW_Z5MdWitfVRg 40478
RiboMiner-0.2.3.2.1.dist-info/WHEEL sha256=D1Wh14kWDxPnrM-5t_6UCB-UuQNrEODtRa3vF4OsvQY 97
RiboMiner-0.2.3.2.1.dist-info/entry_points.txt sha256=BZmotsaNBEybDQAetLL5vFa6P8vnuwcEgrJ_-VtPkis 2363
RiboMiner-0.2.3.2.1.dist-info/top_level.txt sha256=-6_i7rzF7rgLom7_rLue_j21ceKAp8crJwg-1uFqpOU 15
RiboMiner-0.2.3.2.1.dist-info/RECORD — —

top_level.txt

RiboMiner
data

entry_points.txt

[console_scripts]
CoverageOfEachTrans = RiboMiner.CoverageOfEachTrans:main
EnrichmentAnalysis = RiboMiner.EnrichmentAnalysis:main
EnrichmentAnalysisForSingleTrans = RiboMiner.EnrichmentAnalysisForSingleTrans:main
ExtractSequenceCenteredOnAPosition = RiboMiner.ExtractSequenceCenteredOnAPosition:main
GCContent = RiboMiner.GCContent:main
GetProteinCodingSequence = RiboMiner.GetProteinCodingSequence:main
GetUTRSequences = RiboMiner.GetUTRSequences:main
LengthDistribution = RiboMiner.LengthDistribution:main
MergeSampleDensitys = RiboMiner.MergeSampleDensitys:main
MetageneAnalysis = RiboMiner.MetageneAnalysis:main
MetageneAnalysisForTheWholeRegions = RiboMiner.MetageneAnalysisForTheWholeRegions:main
ModifyHTseq = RiboMiner.ModifyHTseq:main
OutputTranscriptInfo = RiboMiner.OutputTranscriptInfo:main
PausingScore = RiboMiner.PausingScore:main
Periodicity = RiboMiner.Periodicity:main
PlotEnrichmentRatio = RiboMiner.PlotEnrichmentRatio:main
PlotGCContent = RiboMiner.PlotGCContent:main
PlotHydropathyCharge = RiboMiner.PlotHydropathyCharge:main
PlotMetageneAnalysis = RiboMiner.PlotMetageneAnalysis:main
PlotMetageneAnalysisForTheWholeRegions = RiboMiner.PlotMetageneAnalysisForTheWholeRegions:main
PlotPolarity = RiboMiner.PlotPolarity:main
PlotRiboDensityAroundTriAAMotifs = RiboMiner.PlotRiboDensityAroundTriAAMotifs:main
PlotRiboDensityAtEachKindAAOrCodon = RiboMiner.PlotRiboDensityAtEachKindAAOrCodon:main
PlotTransCoverage = RiboMiner.PlotTransCoverage:main
PolarityCalculation = RiboMiner.PolarityCalculation:main
ProcessPausingScore = RiboMiner.ProcessPausingScore:main
RPFdist = RiboMiner.RPFdist:main
ReadsLengthOfSpecificRegions = RiboMiner.ReadsLengthOfSpecificRegions:main
RiboDensityAroundTripleteAAMotifs = RiboMiner.RiboDensityAroundTripleteAAMotifs:main
RiboDensityAtEachKindAAOrCodon = RiboMiner.RiboDensityAtEachKindAAOrCodon:main
RiboDensityAtEachPosition = RiboMiner.RiboDensityAtEachPosition:main
RiboDensityForSpecificRegion = RiboMiner.RiboDensityForSpecificRegion:main
RiboDensityOfDiffFrames = RiboMiner.RiboDensityOfDiffFrames:main
StatisticReadsOnDNAsContam = RiboMiner.StatisticReadsOnDNAsContam:main
cAI = RiboMiner.cAI:main
cAIPlot = RiboMiner.cAIPlot:main
enrichmentMeanDensity = RiboMiner.enrichmentMeanDensity:main
hydropathyCharge = RiboMiner.hydropathyCharge:main
tAI = RiboMiner.tAI:main
tAIPlot = RiboMiner.tAIPlot:main