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ramifi

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0.3.0 ramifi-0.3.0-py3-none-any.whl

Wheel Details

Project: ramifi
Version: 0.3.0
Filename: ramifi-0.3.0-py3-none-any.whl
Download: [link]
Size: 117692
MD5: 0a466cefab808051cabaf13363631c4f
SHA256: ede7e7361dc1428a4c229b6ebd7182852b8c9124e5e33a85363d51037343222a
Uploaded: 2023-01-25 17:24:46 +0000

dist-info

METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt

METADATA

Metadata-Version: 2.1
Name: ramifi
Version: 0.3.0
Summary: Script to do recombinant read analysis
Author: Chienchi Lo
Author-Email: chienchi[at]lanl.gov
Home-Page: https://github.com/chienchi/ramifi
License: LICENSE
Keywords: recombinant,mix-infection
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Operating System :: OS Independent
Classifier: Development Status :: 4 - Beta
Requires-Dist: plotly (>=5.5.0)
Requires-Dist: pandas (>=1.2.4)
Requires-Dist: pysam (>=0.16.0.1)
Requires-Dist: kaleido (>=0.2.1)
Requires-Dist: biopython (==1.78)
Requires-Dist: importlib-resources (==5.7.1)
Description-Content-Type: text/markdown
[Description omitted; length: 10601 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.38.4)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
ramifi/__init__.py sha256=GFUdX-km_bc8aY79hxziyUWcfTBzenByLr3kjOgW8no 1416
ramifi/ncbi_trace_lineage_to_json.py sha256=x1-5wP_r9qF8HWNDpXLy6N5wYJKJNMZUpKYaBWvHDKY 1803
ramifi/ramifi.py sha256=lk-kN3-6n-RLD9O7ehbMoQ80K8mY3jA2EPEwT1ye0M4 77742
ramifi/translate.py sha256=G5Uh2pFktvQN_e2aARBKyhTGncvzZw0OnfFLhkyTnf8 5591
ramifi/varJSonToGFF.py sha256=ShSWdr9xl8ErR-JOSrSevueuISqwX4sZ7f3oiyLCV4I 1951
ramifi/data/NC_045512.fasta sha256=CJHADMLVA_WODGAM5e5k6cZLk5Ulxw1UhrxGy8fLBz4 30429
ramifi/data/NC_045512.fasta.fai sha256=yHk6-QpWElUDOnIOdo1AmmxN6pNeDS_PuZm5WrRSCZ0 27
ramifi/data/Omicron_lineage_vs_allOthersInOmicron.gff sha256=MfAFlXCvJCVZ0IZGyfsZcb4wV5x0ZXUY9DW1EavVtd8 4705
ramifi/data/Omicron_lineage_vs_allOthersInOmicron.json sha256=x3pAYZAGZ7Q9TsOb4W7NesZ1AM_JL0AO-3PdbMZWv78 1573
ramifi/data/SARS-CoV-2.json sha256=Lc1KXH6m9NBxj73eVozrGbUoSE1eRHRS2o-tolGGqGE 33771
ramifi/data/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
ramifi/data/lineage_mutation.json sha256=bAgTlMAGgZQ8NP-8tDygEcfHRpoxkwp-ShjEOiLije8 577691
ramifi/data/uniq_variants.json sha256=hMymY7ebFiLz4EUU6Q2kyw9QwpUUnhGzMG0-u_GBYXY 2047
ramifi/data/variant_mutation.gff sha256=_usfEAioKGoWRLoHXVuflqp_pxTap_n3wk0IDW2fU64 28050
ramifi/data/variant_mutation.json sha256=Nbr-wN9-qNVicRcLWJGKsfArD9WHYdMPWcBkmi5p9ic 8655
ramifi-0.3.0.dist-info/LICENSE sha256=jOtLnuWt7d5Hsx6XXB2QxzrSe2sWWh3NgMfFRetluQM 35147
ramifi-0.3.0.dist-info/METADATA sha256=6mWeKMkJqgahtBwcOQ8pmF_SbMQuaQ9uAc0zFyB2IRk 11448
ramifi-0.3.0.dist-info/WHEEL sha256=2wepM1nk4DS4eFpYrW1TTqPcoGNfHhhO_i5m4cOimbo 92
ramifi-0.3.0.dist-info/entry_points.txt sha256=kpEXefSRVGtco2T4Ol-y05IR3_-AHxEDHEKIGrlPkUU 47
ramifi-0.3.0.dist-info/top_level.txt sha256=YPK4n_8jXBwVBdvaiMeLIg9A1Wf7t1Mb661gZYhup14 7
ramifi-0.3.0.dist-info/RECORD — —

top_level.txt

ramifi

entry_points.txt

[console_scripts]
ramifi = ramifi.ramifi:main