Reverse Dependencies of python-bioformats

The following projects have a declared dependency on python-bioformats:

• batoolset — An aggregate of functions I find useful
• c7m — Module for analysis of high-throughput, fluorescence, wide-field microscopy images.
• cellprofiler-core — no summary
• cif2bin — Convert Amnis ImageStream cif-files to a binary format.
• cisipy — Compressed imaging transcriptomics in Python.
• deepliif — DeepLIIF: Deep-Learning Inferred Multiplex Immunofluorescence for Immunohistochemical Image Quantification
• FluorSeg — Segment regions from fluorescence images
• ifcimglib — Library containing read, and preprocessing functions for imaging flow cytometry images contained in Lightning Memory-mapped Databases (lmdb).
• islets — no summary
• large-image-source-bioformats — An bioformats tilesource for large_image.
• magellanmapper — 3D atlas analysis and annotation
• micdata — Load and process microscopy data for deep learning
• microscoper — A simple wrapper for python-bioformats to convert .vsi CellSense format to TIFF.
• mplex-image — A python3-based image analysis package to achieve fully-documented and reproducible visualization and analysis of bio-medical microscopy images.
• OmeSliCC — Ome(ro) Slide Image Conversion and Compression pipeline
• pathml — Tools for computational pathology
• pycziutils — Python utilities to read CZI files and parse metadata through python-bioformats
• pyfigures — PyFigures will assist you assemble publication ready scientific figures in no time.
• pyoformats — PyoFormats: Simple wrapper for python-bioformats
• vidtrain — Deep learning annotation training and prediction workflow for microscopy video data