Reverse Dependencies of pyopenms

The following projects have a declared dependency on pyopenms:

• asari-metabolomics — LC-MS metabolomics data preprocessing
• cagey — Streamlined automated data analysis.
• diapysef — Analysis, conversion and visualization of diaPASEF data.
• easypqp — EasyPQP: Simple library generation for OpenSWATH
• glyxtoolms — glyxtoolms - python tools for glycopeptide analysis with OpenMS
• ibaqpy — Python package to compute intensity base absolute expression values
• ibench — Benchmarking for mass spectrometry identifications.
• instanovo — De novo sequencing with InstaNovo
• ionmob — predict peptide collision-cross sections / ion-mobilities
• IPTKL — IPTK is a library specialized in the analysis of HLA-peptidomes identified through an immunopeptidomics pipeline.
• kendrick — Towards automating Kendrick mass plots
• massdash — massdash
• MOBiceps — Python tools for Mass Spectrometry and Omics data.
• ms2rescore — MS²Rescore: Sensitive PSM rescoring with predicted MS² peak intensities and retention times.
• msaris — Python package to identify isotope patterns and their formulas
• mzml2gnps — A package for preprocessing mzML files for GNPS molecular networking
• openacquisition — A package for creating data acquisition methods for mass spectrometers
• pmultiqc — Python package for quality control of proteomics datasets, based on multiqc package
• preprocessmzML — A package for preprocessing mzML files for ZooMS analysis
• psm-utils — Common utilities for parsing and handling peptide-spectrum matches and search engine results.
• pypgatk — Python tools for proteogenomics
• pyproteininference — Python Package for running custom protein inference algorithms on tab-formatted tandem MS/MS search results.
• quantms-rescoring — quantms-rescoring: Python scripts and helpers for the quantMS workflow
• quantms-utils — Python scripts and helpers for the quantMS workflow
• quantmsio — Convert multiple files into quantms.io format
• spectrum-io — IO related functionalities for oktoberfest.
• synthedia — Generate synthetic DIA LC-MS/MS proteomics data
• Time-Corrector — An acquisition time correction tool based on the retention index system for LC-MS data