Reverse Dependencies of pynrrd

The following projects have a declared dependency on pynrrd:

• allensdk — core libraries for the allensdk.
• atlannot — Align and improve brain annotation atlases
• atlinter — Interpolate missing section images in gene expression volumes
• automatic-actions — Test lib for automatic actions.
• axon-synthesis — A package to synthesize artificial axons
• barbell2 — Collection of Python libraries and tools
• barbell2-bodycomp — components for command-line body composition analysis
• bigstream — Tools for distributed alignment of massive images
• bmtk — Brain Modeling Toolkit
• brainio — Loading and saving of brain imaging data.
• bsb-core — `bsb-core` is the backbone package contain the essential code of the BSB: A component
• ccf-streamlines — Projection of Allen CCF data via streamlines
• cellpose — anatomical segmentation algorithm
• cellpose-plus — cell segmenetation framework based on cellpose
• CircuitSeeker — Tools for finding neural circuits
• ctunet — 3D UNet for CT segmentation with PyTorch
• deepneuro — DeepNeuro: A deep learning python package for neuroimaging data.
• dir-content-diff — Simple tool to compare directory contents.
• dorkylever-lama-phenotype-detection — Phenotype detection pipeline for finding abnormalities in mouse embryos
• element-electrode-localization — Electrode localization DataJoint element
• featureforest — A napari plugin for segmentation using vision transformer features
• foss4fus — Open source framework for functional ultrasound imaging data analysis
• foundation-cancer-image-biomarker — Official repo for Foundation Models for Quantitative Biomarker Discovery in Cancer Imaging [INSERT DOI]
• fw-gear-mask-exporter — no summary
• genepy3d — Python Library for 3D Quantitative Geometry in Computation Microscopy
• greedypy — Fast deformable registration in python
• harp-image-preprocess — Cross-platform application for automating the processing of μCT and OPT image data.
• headctools — A set of tools for preproccessing and performing brain segmentation and skull reconstruction on head CT images
• herbs — A Python-based GUI for Histological E-data Registration in Brain Space
• hsi-wizard — See Beyond the Visible: The Magic of Hyperspectral Imaging
• iblatlas — IBL atlas module
• ibllib — IBL libraries
• Icube-radiomics — Perform Radiomics Feature Extraction and Machine Learning
• imio — Loading and saving of image data.
• imsy-htc — Framework for automatic classification and segmentation of hyperspectral images.
• ipasc-tool — Standardised Data Access Tool of IPASC
• lama-phenotype-detection — Phenotype detection pipeline for finding abnormalities in mouse embryos
• liom-toolkit — Package to support the research of LIOM.
• lwviewv2 — Viewer of images in python.
• med-imagetools — Med-Imagetools: Transparent and Reproducible Medical Image Processing Pipelines in Python
• mermaid — Image registration toolbox based on pyTorch
• mesh-kit — no summary
• monai — AI Toolkit for Healthcare Imaging
• monai-weekly — AI Toolkit for Healthcare Imaging
• monailabel-weekly — Active Learning Toolkit for Healthcare Imaging
• mousechd — Segmenting hearts and screening congenital heart diseases in mice
• navis — Neuron Analysis and Visualization library
• numpyimage — Load, save, and manipulate image files as numpy arrays
• pacfish — Photoacoustic Converter for Information Sharing (PACFISH)
• pyfroc — python framework for FROC/AFROC analysis
• pyfus-lib — Open source framework for functional ultrasound imaging data analysis
• PyNutil — a package to translate data between common coordinate templates
• pyrateShield — Generate radiation-dose maps
• pyswcloader — analysis tool for neuron swc files
• region-grower — Synthesize cells in a given spatial context.
• sand-atlas — A python package for processing 3d volumetric data to build meshes for the Sand Atlas data repository
• sciberia — Sciberia helper libraries
• shapeaxi — Shape Analysis Exploration and Interpretability
• simpa — Simulation and Image Processing for Photonics and Acoustics
• slicerio — Utilities for 3D Slicer
• supervisely — Supervisely Python SDK.
• swcgeom — Neuron geometry library for swc format
• vesuvius — no summary