Reverse Dependencies of pymzML

The following projects have a declared dependency on pymzML:

• calisp — Isotope analysis of proteomics data
• DecoyFree-MSFDR — A package to estimate FDR in mass-spectrometry searching results using decoy-free approach
• dimepy — Python package for the high-throughput nontargeted metabolite fingerprinting of nominal mass direct injection mass spectrometry.
• mass-spec-utils — Some useful MS code
• massql — Mass spectrometry query language python implementation
• ms-mint — Metabolomics Integrator (Mint)
• msAI — Tools to create AI models for mass spectrometry data
• msigen — A package for converting spectrometry imaging line scan data files to a visualizable format
• msions — A python package for creating MS TIC and ion plots
• mskit — Utils for MS data processing
• protein-turnover — protein turnover pipeline
• protmaster — A powerful proteomic analysis tool
• pyhrms — A powerful GC/LC-HRMS data analysis tool
• PyMassSpec — Python Toolkit for Mass Spectrometry
• pyqms — pyQms - Python module for accurate quantification of mass spectrometry data
• qceltis — Quality Control Package for DIA Proteomics
• simepy — no summary
• single-mol — A package to accompany the Single Molecule Counting Perspective.
• spectrum-io — IO related functionalities for oktoberfest.
• uMAIA — Toolbox for the processing and analysis of MALDI-MSI data
• ursgal — ursgal
• vimms — A framework to develop, test and optimise fragmentation strategies in LC-MS metabolomics.
• xi-mzidentml-converter — xi-mzidentml-converter uses pyteomics (https://pyteomics.readthedocs.io/en/latest/index.html) to parse mzIdentML files (v1.2.0) and extract crosslink information. Results are written to a relational database (PostgreSQL or SQLite) using sqlalchemy.