Reverse Dependencies of pydeseq2

The following projects have a declared dependency on pydeseq2:

• capcruncher — An end-to-end solution for processing Capture-C, Tri-C and Tiled-C data
• cellscope — single cell multi-omics data analysis toolkit
• crispr-millipede — Calculate the enrichment scores of CRISPR alleles and variants from direct target amplicon-sequencing data using Bayesian linear regression model 'millipede'
• fedpydeseq2 — This package is a SubstraFL implementation FL of PyDESeq2.
• fedpydeseq2-datasets — This package contains utilities to process TCGA data for fedpydeseq2.
• liana — LIANA+: a one-stop-shop framework for cell-cell communication
• MetaXTools — MetaXTools is a novel tool for linking peptide sequences with taxonomic and functional information in Metaproteomics.
• networkcommons — Integrated framework for network inference and evaluation using prior knowledge and omics data
• omicverse — OmicVerse: A single pipeline for exploring the entire transcriptome universe
• pegasuspy — Pegasus is a Python package for analyzing sc/snRNA-seq data of millions of cells
• pertpy — Perturbation Analysis in the scverse ecosystem.
• pyscaLR — scaLR: Single cell analysis using low resource.
• pyturbseq — A Python package for perturbational single-cell data
• rectanglepy — Hierarchical deconvolution of bulk transcriptomics
• scez — Single Cell Analysis, Easy Mode!