Reverse Dependencies of pybids

The following projects have a declared dependency on pybids:

• asltk — A quick to use library to process images for MRI Arterial Spin Labeling imaging protocols.
• banana — Brain imAgiNg Analysis iN Arcana (Banana): brain imaging analysis workflows implemented in the Arcana framework (arcana.readthedocs.io)
• bids — bids: a template for small scientific Python projects
• bids-neuropoly — An open-source BIDS parser.
• bidsmreye — bids app using deepMReye to decode eye motion for fMRI time series data
• bidsonym — A BIDSapp for deidentification of neuroimaging data.
• brainiak — Brain Imaging Analysis Kit
• cbicqc — MRI phantom quality control tool
• clinica — Software platform for clinical neuroimaging studies
• cloud-bids-layout — Cloud-BIDS-Layout: Use pybids with Amazon S3
• cohort-creator — Creates a neuroimaging cohort by aggregating data across datasets.
• comet-toolbox — Dynamic functional connectivity toolbox for multiverse analysis
• contarg — Python package implementing/wrapping connectivity based rTMS targeting methods.
• cubids — Curation of BIDS (CuBIDS): A sanity-preserving software package for processing BIDS datasets.
• cubids-bond-fork — BIDS On Disk Editor
• cvrmap — CVRmap is an opensource software to compute maps of Cerebro-Vascular Reactivity
• datalad-neuroimaging — DataLad extension package for neuro/medical imaging
• dmriprep — dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data.
• dwiprep — DWIprep is a robust and easy-to-use preprocessing pipeline for diffusion-weighted imaging of various acquisitions.
• dwiqc — Quality Assurance Pipeline for Diffusion MR Data
• eegio — EEGIO: An io package for eeg data that is MNE-Python and MNE-BIDS compatible .
• ephypype — Python package providing pipelines for electrophysiological (EEG/MEG) data within nipype framework.
• fids — fake bids dataset generator
• fitlins — Fit Linear Models to BIDS Datasets
• fmridenoise — fMRIDenoise - automated denoising, denoising strategies comparison, and functional connectivity data quality control.
• fmriprep — A robust and easy-to-use pipeline for preprocessing of diverse fMRI data
• fmriprep-group-report — Make consolidated group reports from fmriprep output.
• forbids — forBIDS - BIDS protocol compliance validation
• glm-express — Automated linear models for functional neuroimaging data
• glmdenoise — Python GLMdenoise
• hcp2bids — For downloading and converting HCP1200 data into BIDS spec.
• ivadomed — Feature conditioning for IVADO medical imaging project.
• libbids — Library for generating data using the Brain Imaging Data Structure
• m2g — Neuro Data MRI to Graphs Pipeline
• macapype — Pipeline for anatomic processing for macaque
• mindstorm — Mindstorm: Advanced analysis of neuroimaging data
• mngs — For lazy python users (monogusa people in Japanse), especially in ML/DSP fields
• mriqc — Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain.
• ndmg — Neuro Data MRI to Graphs Pipeline
• neurocaps — Co-activation Patterns (CAPs) Python package
• neuroimager — A collection of utilities used for MRI data analysis
• nibabies — Processing workflows for magnetic resonance images of the brain in infants
• nibetaseries — BetaSeries Correlations implemented in Nipype
• nipoppy — Standardized organization and processing of neuroimaging-clinical datasets
• nipype — Neuroimaging in Python: Pipelines and Interfaces
• nireports — NiReports - The Visual Report System (VRS) of NiPreps
• niworkflows — NeuroImaging Workflows provides processing tools for magnetic resonance images of the brain.
• p3proc — The p3 fmri processing pipeline
• panpipelines — MRI Processing Pipelines for PAN Healthy Minds for Life Study
• petprep-extract-tacs — PETPrep Extract Time Activity Curves Workflow
• petprep-hmc — PETPrep Head Motion Correction Workflow
• petutils — no summary
• physutils — Set of utilities meant to be used with Physiopy libraries
• pipetography — Pre/Post-processing pipeline for tractography wrapped around nipype and mrtrix3
• py-neuromodulation — Real-time analysis of intracranial neurophysiology recordings.
• pyAFQ — pyAFQ: Automated Fiber Quantification ... in Python
• pyalfe — no summary
• pybids — bids: interface with datasets conforming to BIDS
• pybids-reports — pybids-reports: report generator for BIDS datasets
• pydra-nireports — Pydra tasks package for nireports
• pydra-niworkflows — Pydra tasks package for niworkflows
• pynidm — PYNIDM: a Python NIDM library and tools
• pypmi — pypmi is a Python toolbox for working with data from the Parkinson's Progression Markers Initiative (PPMI)
• rabies — RABIES: Rodent Automated Bold Improvement of EPI Sequences.
• rsHRF — BIDs App to retrieve the haemodynamic response function from resting state fMRI data
• scilpy — Scilpy: diffusion MRI tools and utilities
• sekupy — Detergent for your dirty neuroimaging pipelines
• simtools — A set of MapReduce programs to process brain images
• smriprep — sMRIPrep (Structural MRI PREProcessing) pipeline
• snakebids — BIDS integration into snakemake workflows
• templateflow — TemplateFlow Python Client - TemplateFlow is the Zone of neuroimaging templates.
• Teneto — Temporal network tools
• warpkit — A python library for neuroimaging transformations