Reverse Dependencies of pybel

The following projects have a declared dependency on pybel:

• amdnet — Structure motif-centric learning framework for inorganic crystalline systems.
• bel-commons — A web application exposing core PyBEL functionalities
• bel-enrichment — A package for generating curation sheets for rationally enriching a BEL graph using INDRA and PyBEL.
• bel-repository — A utility for loading data from repositories of BEL documents.
• bel2scm — A package for creating causal graphs in pyro
• bio2bel — A framework for converting biological data sources to BEL
• bio2bel-adeptus — Bio2BEL ADEPTUS.
• bio2bel-chebi — A package for converting ChEBI to BEL
• bio2bel-drugbank — A package for converting DrugBank to BEL
• bio2bel-entrez — A package for parsing and storing Entrez Gene
• bio2bel-expasy — A package for parsing and storing the ExPASy Enzyme Database
• bio2bel-famplex — Downloader, parser, and BEL converter for FamPlex
• bio2bel-go — A package for converting GO to BEL
• bio2bel-hgnc — A package for converting HGNC to BEL
• bio2bel-hippie — Bio2BEL HIPPIE.
• bio2bel-hsdn — Converts the human symptoms-disease network produced by Zhou and Himmelstein to BEL
• bio2bel-interpro — A package for converting InterPro to BEL
• bio2bel-kegg — A package for converting KEGG gene sets into BEL
• bio2bel-mesh — A package for converting MeSH to BEL
• bio2bel-mirbase — Convert miRBase to BEL
• bio2bel-mirtarbase — A package for converting miRTarBase to BEL
• bio2bel-msig — A package for converting MSigDB gene sets into BEL
• bio2bel-pfam — Bio2BEL PFAM.
• bio2bel-reactome — A wrapper around Reactome RESTful API
• bio2bel-sider — Bio2BEL SIDER.
• bio2bel-wikipathways — A package for converting Wikipathways to BEL
• biokeen — A package for training and evaluating biological knowledge graph embeddings
• compassdock — A comprehensive accurate assessment approach for deep learning based molecular docking
• compath-resources — ComPath Resource Utilities
• compath-utils — A utilities package for ComPath
• conib — Curation of Neurodegeneration in BEL (CONIB)
• drug2ways — Reasoning over polar paths in biological networks for drug discovery applications
• emmaa — Ecosystem of Machine-maintained Models with Automated Analysis
• hemekg — Mechanistic knowledge about heme and hemolytic disorders in Biological Expression Language with PyBEL
• mpinterfaces — High throughput analysis of interfaces using VASP and Materials Project tools
• neurommsig-epilepsy — Mechanistic pathway knowledge on Epilepsy encoded in Biological Expression Language
• pathme — Harmonizing pathway databases using Biological Expression Language (BEL)
• pyannotators-spacyner — Annotator based on Spacy NER
• pybel-artifactory — A PyBEL extension for handling BEL resources with Artifactory
• pybel-cx — A PyBEL extension for interconversion with CX
• pybel-git — PyBEL Git utilities
• pybel-jupyter — A PyBEL extension for Jupyter notebooks
• pybel-ols — A package for building BEL resource files with the EBI Ontology Lookup Service.
• pybel-tools — A cool pool of tools for BEL
• pyprocessors-opennre — Processor based on Huggingface transformers zero-shot classification pipeline
• pyxtal — Python code for generation of crystal structures based on symmetry constraints.
• QM40-dataset-for-ML — QM40 is a QMx type of dataset which includes 150K molecules optimized from B3LYP/6-31G(2df,p) level of theory in the Gaussian16 with QM parameters, optimized coordinates, Mulliken charges and Local vibrational mode parameters as a quantitative measurer of the bond strengths.
• robocrys — Automatic generation of crystal structure descriptions
• selventa-knowledge — Selventa Large and Small Corpora via PyBEL
• stonkgs — Sophisticated Transformers for Biomedical Text and Knowledge Graph Data
• y0-bio — Biological applications of y0