Reverse Dependencies of py3Dmol

The following projects have a declared dependency on py3Dmol:

• afpdb — A Numpy-based PDB structure manipulation package
• afusion — AFusion: AlphaFold 3 GUI & Toolkit with Visualization
• aimDIAS — Very fast D/I analysis with aimnet2
• alpha-viewer — Alphafold Protein model viewer
• alphapulldown — Pipeline allows massive screening using alphafold
• amcess2024 — Atomic and Molecular Cluster Energy Surface Sampler
• architector — The architector python package - for 3D inorganometallic complex design.
• auto-qchem — auto-qchem
• automol — no summary
• bioat — bioat, a python package & command line toolkit for Bioinformatics and data science!
• colabfold — Making protein folding accessible to all. Predict proteins structures both in google colab and on your machine
• colabseg — Colab Seg
• compassdock — A comprehensive accurate assessment approach for deep learning based molecular docking
• conformer-rl — Deep Reinforcement Library for Conformer Generation
• databuster — A comprehensive chemical compound analysis platform for drug discovery research, developed by Suneel Kumar BVS, Ph.D., ATOMICAS AI SOLUTIONS PRIVATE LIMITED (https://theatomicas.io)
• dev-hi-chem — dev-hi-chem - A template Python package for Harms Informatics
• easydiffraction — Making diffraction data analysis and modelling easy
• etflow — Equivariant Flow Matching for Molecular Conformer Generation
• folding — ColabFold modified for AlphaFold2 and local installation
• gc-meox-tms — In-silico MeOX/TMS derivatization of chemical compounds
• gofigr — GoFigr client library
• hi-chem — hi-chem - A template Python package for Harms Informatics
• imperial-materials-simulation — Molecular simulation tool made for the theory and simulation module taken by materials science and engineering undergraduates at Imperial College London
• kagglefold — Making protein folding accessible in kaggle platform
• MCPoly — Useful tools for Computational Chemistry for polymers
• mess-jax — MESS: Modern Electronic Structure Simulations
• mmtfPyspark — Methods for parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark
• MolConfViewer — Package to visualize molcules and their conformations in Jupyter
• MolParse — Package for parsing, writing, and modifying molecular structure files
• nbed — no summary
• panel-chemistry — This project makes it super simple to do exploratory data analysis and develop high-quality Panel data apps within the domain of chemistry.
• PDBViewer — Automatically retrieve a PDB file for a given RCSB PDB id and visualize its 3D structure.
• polymerist — A unified set of tools for setting up general organic polymer systems for MD within the OpenFF framework
• PoreFinding — PoreFinding package based on HOLE and MDAnalysis
• PoseButcher — A tool for categorising and segmenting virtual hits with reference to experimental protein structures and (fragment) hits.
• project-raccoon — ProjectRaccoon is a Python tool designed for the generation of PDB (Protein Data Bank) files for polymer peptide conjugates, polypeptides, and polymers in a building block fashion.
• prolif — Interaction Fingerprints for protein-ligand complexes and more
• protein-design — Python tools for protein design
• proteinflow — Versatile pipeline for processing protein structure data for deep learning applications.
• Protenix — A trainable PyTorch reproduction of AlphaFold 3.
• proteusAI — ProteusAI is a python package designed for AI driven protein engineering.
• PyBigDFT — Python utilities for BigDFT
• pygsm-gaussian — Reaction path searching
• pyobjcryst — Python bindings to the ObjCryst++ library.
• pyRDTP — Manipulate chemical geometries for heterogeneous catalysis
• pyxtal — Python code for generation of crystal structures based on symmetry constraints.
• qcio — Beautiful and user friendly data structures for quantum chemistry.
• RankChem — RankChem project
• rdmc — A light-weight software package with expertise in handling Reaction Data and Molecular (including transitions states) Conformers.
• stmol — Streamlit component for molecular visualization
• useful-rdkit-utils — A collection of useful RDKit functions
• viewer3d — Display PackedPose objects, Pose objects, or PDB files within a Jupyter notebook and Google Colab.