Path |
Digest |
Size |
prokbert/ProkBERTDataCollator.py |
sha256=vReMJgGKNJW4oAem4lVcb8pu9dUWx18qGWJSH7SnUUY
|
5700 |
prokbert/__init__.py |
sha256=HeQElldy8srQebTGwqgwvQyA5Yo1hB13DhwLlXihHwY
|
36 |
prokbert/config_utils.py |
sha256=nGBNE1NkUbznc4xnkGJiaN7PxdzB-y2wMUdxYne7J1s
|
35258 |
prokbert/general_utils.py |
sha256=CP92Ku0rohKMasOfwKT0-wgVXdFAvioYdvQag_DiD-g
|
11133 |
prokbert/models.py |
sha256=QmMNVbkLHBD7oQX6NazLmUpkPAQbVuNfFrzQwWzfXPI
|
11720 |
prokbert/prok_datasets.py |
sha256=f2kWggdmUXhwFe4VTIUwPeApSjOVpozoiSEwwYb_-zA
|
10525 |
prokbert/prokbert_tokenizer.py |
sha256=B6jDLe48eMzM7lX-aw_25rWdLpzwHFMDDNJ8ioEKdY0
|
30187 |
prokbert/sequtils.py |
sha256=HqI_d4RpkI7BXBy0jFCcnu3qhwsqZwBadFUGdiQIb-Q
|
42840 |
prokbert/tokenizer.py |
sha256=WFLQoortnS_ePSTVlubVLcT0GQ0u0sOlEIv2SJNlQyA
|
16415 |
prokbert/training_utils.py |
sha256=6XfFp97rW9e4fHi5aTYL1EcRe1ifUMZ0ynt6qaupkug
|
26608 |
prokbert/configs/pretraining.yaml |
sha256=c-u1hv2EqpojghNoRpMjplogH4fNwKfcNwjotSfa74g
|
7261 |
prokbert/configs/sequence_processing.yaml |
sha256=1utdP7AAK7h2BATEDm-s6ylQvIkkJsz9F9xbRKNliTA
|
4443 |
prokbert/data/ESKAPE_sample.fasta |
sha256=4Uy7-89YL3Q_L3us0Mqyfy_6glTQ1cg2Dr0UnAMFUio
|
9693 |
prokbert/data/pretraining_sample.h5 |
sha256=LmibPbHgZ6GvUY19lpQ0VCcKRi5ziCx5-yj9rrRrUHs
|
536544 |
prokbert/data/preprocessed/pretraining.h5 |
sha256=9-AK4UhQsv9ejcQAL7Zz6zO24eQnGfwAl6pyN4kYv6Y
|
362241 |
prokbert/data/preprocessed/pretraining_k1s1.h5 |
sha256=lKmr2wSYvtVfcuxhUQyzIHHGaydLzX4hkgysPAAEmSk
|
333999 |
prokbert/data/preprocessed/pretraining_k6s1.h5 |
sha256=k7a9q2GjHsjeEmVr81uehVJC3bnMUgG6k-bgkbbhiJw
|
557194 |
prokbert/data/preprocessed/pretraining_k6s2.h5 |
sha256=Q183CwubvPGO01RTErp0cPu0Nh0GlK08s6pQv86sLLM
|
589081 |
prokbert/data/preprocessed/pretraininge.h5 |
sha256=Zr01vX3IB8S8O03cZc1IR4-8KdIIimfegj07YheO_Hw
|
230790 |
prokbert/data/pretraining/ESKAPE_sample00.fasta.gz |
sha256=0VO18pvM5SggGW0mcUkSVAyRZLYNwhnbshLs_RMRRHs
|
3433 |
prokbert/data/pretraining/ESKAPE_sample01.fasta.gz |
sha256=LtW02iNzUI5LL0XhNfU-RDZwqzQsElbN58Eu3HhxZBY
|
3456 |
prokbert/data/pretraining/ESKAPE_sample02.fasta.gz |
sha256=GEgZfW1fSxEzXfIbLYJ8TB-uCzMLB1ULttsQu944jHM
|
3993 |
prokbert/data/pretraining/ESKAPE_sample03.fasta.gz |
sha256=x4CuGulW3lOJpddWfElk803--HHI-rbk5X1tCZjtOxo
|
3890 |
prokbert/data/pretraining/ESKAPE_sample04.fasta.gz |
sha256=eCUBF57CBnVWnC7d6Jry9yrnguIjg32kiPWryaPV0OM
|
3850 |
prokbert/data/pretraining/ESKAPE_sample05.fasta.gz |
sha256=xx0m1ibc24vFfJ1oJtNhCNOpGMTjspBIE61DY44sQLY
|
3654 |
prokbert/data/pretraining/ESKAPE_sample06.fasta.gz |
sha256=AFDwW59V9Jw8RtqREN8sMkSCTiGJ-3TEmuid8D7uQO8
|
3875 |
prokbert/data/pretraining/ESKAPE_sample07.fasta.gz |
sha256=3iAPMQGQWRpALDVEqnL1fhJuvCYpi-FYzPp_IvxAwWI
|
3570 |
prokbert/data/pretraining/ESKAPE_sample08.fasta.gz |
sha256=LMWaU5u0lggEDw_hS2RDB1_on_5kjL0d84zH7ZTwf94
|
4013 |
prokbert/data/pretraining/ESKAPE_sample09.fasta.gz |
sha256=Y-A4XK2Gl3oWbeT0sCmksBaO4lNrrdRy8jskp4Is_sc
|
4171 |
prokbert/data/pretraining/ESKAPE_sample10.fasta.gz |
sha256=SyBd3iHlr4GPKFRd4u1rzUiY3brJs8Vht3jpyhCPYDE
|
3823 |
prokbert/data/prokbert_vocabs/prokbert-base-dna1/vocab.txt |
sha256=HQLKNep574PR11mlRO8eEnPy1nv2zPh0GmXSh1Xh-w8
|
39 |
prokbert/data/prokbert_vocabs/prokbert-base-dna2/vocab.txt |
sha256=1S9-RFj3WXJm6HRambyZgAyMacKWcgEG79Is5D4LOgI
|
79 |
prokbert/data/prokbert_vocabs/prokbert-base-dna3/vocab.txt |
sha256=L8uWp-XHSGQf8ItvNEwk8GEUBwRA2qH4nPlLc1p3Npg
|
287 |
prokbert/data/prokbert_vocabs/prokbert-base-dna4/vocab.txt |
sha256=eU_Mrc2s5tydYr2hf--p2c7pwhDTH_VgFBEiZrnmGkA
|
1311 |
prokbert/data/prokbert_vocabs/prokbert-base-dna5/vocab.txt |
sha256=8qvNIjMlzkt81qUrZA1nQc6POIt8VKFqVovX-5QGgns
|
6175 |
prokbert/data/prokbert_vocabs/prokbert-base-dna6/vocab.txt |
sha256=r4pjClMi664wRei0mPK-USJIcGYtjA8Ps2gqPF4dUXs
|
28702 |
prokbert/data/prokbert_vocabs/prokbert-base-dna7/vocab.txt |
sha256=JYtIAXtZKMyzwL6UZ1zxZfLsu3QTiKbanjw7jgGD6T0
|
131103 |
prokbert/data/prokbert_vocabs/prokbert-base-dna8/vocab.txt |
sha256=yW5lLUOUtLrWzXTuc1dy4JOP32rAW0FTtmeFBq1dQJ4
|
589855 |
prokbert/data/prokbert_vocabs/prokbert-base-dna9/vocab.txt |
sha256=Ibv27lwgl2vr5WrKpTDf57yisDHQY8b9BQivpYHI3bo
|
2621471 |
prokbert/data/sample_data/ESKAPE_sample.fasta |
sha256=yOFX3ny9MRI8dURFg0lI5JbbCREdmmx_l0QcYC9Mf1U
|
9922 |
prokbert/data/sample_data/pretraining/ESKAPE_sample00.fasta.gz |
sha256=0VO18pvM5SggGW0mcUkSVAyRZLYNwhnbshLs_RMRRHs
|
3433 |
prokbert/data/sample_data/pretraining/ESKAPE_sample01.fasta.gz |
sha256=LtW02iNzUI5LL0XhNfU-RDZwqzQsElbN58Eu3HhxZBY
|
3456 |
prokbert/data/sample_data/pretraining/ESKAPE_sample02.fasta.gz |
sha256=GEgZfW1fSxEzXfIbLYJ8TB-uCzMLB1ULttsQu944jHM
|
3993 |
prokbert/data/sample_data/pretraining/ESKAPE_sample03.fasta.gz |
sha256=x4CuGulW3lOJpddWfElk803--HHI-rbk5X1tCZjtOxo
|
3890 |
prokbert/data/sample_data/pretraining/ESKAPE_sample04.fasta.gz |
sha256=eCUBF57CBnVWnC7d6Jry9yrnguIjg32kiPWryaPV0OM
|
3850 |
prokbert/data/sample_data/pretraining/ESKAPE_sample05.fasta.gz |
sha256=xx0m1ibc24vFfJ1oJtNhCNOpGMTjspBIE61DY44sQLY
|
3654 |
prokbert/data/sample_data/pretraining/ESKAPE_sample06.fasta.gz |
sha256=AFDwW59V9Jw8RtqREN8sMkSCTiGJ-3TEmuid8D7uQO8
|
3875 |
prokbert/data/sample_data/pretraining/ESKAPE_sample07.fasta.gz |
sha256=3iAPMQGQWRpALDVEqnL1fhJuvCYpi-FYzPp_IvxAwWI
|
3570 |
prokbert/data/sample_data/pretraining/ESKAPE_sample08.fasta.gz |
sha256=LMWaU5u0lggEDw_hS2RDB1_on_5kjL0d84zH7ZTwf94
|
4013 |
prokbert/data/sample_data/pretraining/ESKAPE_sample09.fasta.gz |
sha256=Y-A4XK2Gl3oWbeT0sCmksBaO4lNrrdRy8jskp4Is_sc
|
4171 |
prokbert/data/sample_data/pretraining/ESKAPE_sample10.fasta.gz |
sha256=SyBd3iHlr4GPKFRd4u1rzUiY3brJs8Vht3jpyhCPYDE
|
3823 |
prokbert/tests/__init__.py |
sha256=MsSFjiLMLJZ7QhUPpVBWKiyDnCzryquRyr329NoCACI
|
2 |
prokbert/tests/test_configutils.py |
sha256=_CCdKrtZnxf37jrUO9ImJqc71j6zNZhuWlCmMRU98jc
|
2011 |
prokbert/tests/test_general_utils.py |
sha256=jelVjg5Ots7ctmEUJgnfa9q3RSUFyMuZSc4-bNEoEHc
|
1796 |
prokbert/tests/test_prokBERTDataCollator.py |
sha256=s7JPNjC1eTuyHWTXivkyIr_YBJZei2zSsiDulgW6DFQ
|
1733 |
prokbert/tests/test_prok_datasets.py |
sha256=7n6CCCEGQ8WQLYnq7nYGMN1RMBmXszOlCb8IjceDbE8
|
2696 |
prokbert/tests/test_prokbert_tokenizer.py |
sha256=pFSP9eH4Wo7sPHCxMw5gjYUpqThTEV2ilwhxC2iVJn0
|
5609 |
prokbert/tests/test_sequtils.py |
sha256=Vfj4mzH_eEanoC0mxWozLN03hE0QJfEpM499iHYZOxw
|
23478 |
prokbert-0.0.46.dist-info/LICENSE |
sha256=ZuF_Oles4DSrQiZnwC11E0u1MWGdlJHzq8fqQruKZkM
|
1066 |
prokbert-0.0.46.dist-info/METADATA |
sha256=n3SrZbCRnqqFFIb3PL8MRNgyBnm-sh2orvkVwQyVXfA
|
17324 |
prokbert-0.0.46.dist-info/WHEEL |
sha256=In9FTNxeP60KnTkGw7wk6mJPYd_dQSjEZmXdBdMCI-8
|
91 |
prokbert-0.0.46.dist-info/top_level.txt |
sha256=rYrWZuQMciMwHyn9MqMSjlmnLzzKOfdS2v1G20YHwCw
|
9 |
prokbert-0.0.46.dist-info/RECORD |
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